Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24070

Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24065 and BPHYT_RS24070 are separated by 204 nucleotidesBPHYT_RS24070 and BPHYT_RS24075 are separated by 378 nucleotides BPHYT_RS24065: BPHYT_RS24065 - glucose-methanol-choline oxidoreductase, at 963,065 to 966,523 _RS24065 BPHYT_RS24070: BPHYT_RS24070 - hypothetical protein, at 966,728 to 967,519 _RS24070 BPHYT_RS24075: BPHYT_RS24075 - ATPase, at 967,898 to 969,865 _RS24075 Position (kb) 966 967 968Strain fitness (log2 ratio) -2 -1 0 1at 966.324 kb on + strandat 967.154 kb on - strand, within BPHYT_RS24070at 967.227 kb on + strand, within BPHYT_RS24070at 967.445 kb on - strandat 967.622 kb on - strandat 967.648 kb on + strandat 967.656 kb on - strandat 967.663 kb on - strandat 967.709 kb on + strandat 967.722 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
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966,324 + -0.1
967,154 - BPHYT_RS24070 0.54 +0.3
967,227 + BPHYT_RS24070 0.63 +1.0
967,445 - -1.9
967,622 - +0.0
967,648 + -0.2
967,656 - -0.4
967,663 - -0.1
967,709 + +0.5
967,722 + -0.4

Or see this region's nucleotide sequence