Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23525 and BPHYT_RS23530 are separated by 512 nucleotides BPHYT_RS23530 and BPHYT_RS23535 are separated by 190 nucleotides BPHYT_RS23535 and BPHYT_RS23540 are separated by 32 nucleotides
BPHYT_RS23525: BPHYT_RS23525 - hypothetical protein, at 845,703 to 846,050
_RS23525
BPHYT_RS23530: BPHYT_RS23530 - hypothetical protein, at 846,563 to 846,790
_RS23530
BPHYT_RS23535: BPHYT_RS23535 - ABC transporter substrate-binding protein, at 846,981 to 847,700
_RS23535
BPHYT_RS23540: BPHYT_RS23540 - RND transporter, at 847,733 to 849,241
_RS23540
Position (kb) 846
847
848 Strain fitness (log2 ratio) -1
0
1
2 at 846.007 kb on - strand, within BPHYT_RS23525 at 846.342 kb on + strand at 846.414 kb on + strand at 846.453 kb on - strand at 846.487 kb on + strand at 846.877 kb on + strand at 846.882 kb on - strand at 847.433 kb on - strand, within BPHYT_RS23535 at 847.433 kb on - strand, within BPHYT_RS23535 at 848.175 kb on + strand, within BPHYT_RS23540 at 848.175 kb on + strand, within BPHYT_RS23540 at 848.176 kb on - strand, within BPHYT_RS23540
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 846,007 - BPHYT_RS23525 0.87 -0.4 846,342 + +0.6 846,414 + +1.1 846,453 - +0.3 846,487 + -1.1 846,877 + +0.1 846,882 - +0.5 847,433 - BPHYT_RS23535 0.63 -0.2 847,433 - BPHYT_RS23535 0.63 +1.8 848,175 + BPHYT_RS23540 0.29 +0.4 848,175 + BPHYT_RS23540 0.29 +0.4 848,176 - BPHYT_RS23540 0.29 +0.4
Or see this region's nucleotide sequence