Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22205 and BPHYT_RS22210 overlap by 7 nucleotides BPHYT_RS22210 and BPHYT_RS22215 overlap by 4 nucleotides BPHYT_RS22215 and BPHYT_RS22220 are separated by 7 nucleotides
BPHYT_RS22205: BPHYT_RS22205 - hypothetical protein, at 540,002 to 540,958
_RS22205
BPHYT_RS22210: BPHYT_RS22210 - metal ABC transporter substrate-binding protein, at 540,952 to 541,746
_RS22210
BPHYT_RS22215: BPHYT_RS22215 - hypothetical protein, at 541,743 to 542,828
_RS22215
BPHYT_RS22220: BPHYT_RS22220 - sulfatase, at 542,836 to 544,782
_RS22220
Position (kb) 541
542
543 Strain fitness (log2 ratio) -1
0
1 at 540.908 kb on - strand at 541.958 kb on - strand at 542.322 kb on + strand, within BPHYT_RS22215 at 542.420 kb on - strand, within BPHYT_RS22215 at 542.420 kb on - strand, within BPHYT_RS22215 at 542.788 kb on + strand at 542.886 kb on + strand at 542.887 kb on - strand at 542.888 kb on + strand at 542.888 kb on + strand at 542.889 kb on - strand at 542.889 kb on - strand at 543.159 kb on - strand, within BPHYT_RS22220 at 543.164 kb on + strand, within BPHYT_RS22220 at 543.591 kb on + strand, within BPHYT_RS22220 at 543.684 kb on - strand, within BPHYT_RS22220 at 543.762 kb on - strand, within BPHYT_RS22220 at 543.795 kb on - strand, within BPHYT_RS22220
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 540,908 - +0.3 541,958 - -0.5 542,322 + BPHYT_RS22215 0.53 +1.5 542,420 - BPHYT_RS22215 0.62 +0.9 542,420 - BPHYT_RS22215 0.62 -0.3 542,788 + -1.0 542,886 + +0.7 542,887 - -0.8 542,888 + -0.1 542,888 + +0.2 542,889 - +0.3 542,889 - -0.2 543,159 - BPHYT_RS22220 0.17 +0.4 543,164 + BPHYT_RS22220 0.17 -0.6 543,591 + BPHYT_RS22220 0.39 +0.2 543,684 - BPHYT_RS22220 0.44 -0.7 543,762 - BPHYT_RS22220 0.48 -0.2 543,795 - BPHYT_RS22220 0.49 -0.6
Or see this region's nucleotide sequence