Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21970 and BPHYT_RS21975 are separated by 219 nucleotides BPHYT_RS21975 and BPHYT_RS21980 are separated by 67 nucleotides BPHYT_RS21980 and BPHYT_RS21985 are separated by 86 nucleotides
BPHYT_RS21970: BPHYT_RS21970 - nucleoside hydrolase, at 485,540 to 486,505
_RS21970
BPHYT_RS21975: BPHYT_RS21975 - 2-dehydropantoate 2-reductase, at 486,725 to 487,660
_RS21975
BPHYT_RS21980: BPHYT_RS21980 - hypothetical protein, at 487,728 to 488,027
_RS21980
BPHYT_RS21985: BPHYT_RS21985 - spermidine/putrescine ABC transporter substrate-binding protein, at 488,114 to 489,160
_RS21985
Position (kb) 486
487
488 Strain fitness (log2 ratio) -1
0
1 at 485.822 kb on - strand, within BPHYT_RS21970 at 486.266 kb on + strand, within BPHYT_RS21970 at 486.267 kb on - strand, within BPHYT_RS21970 at 486.342 kb on + strand, within BPHYT_RS21970 at 486.636 kb on + strand at 486.736 kb on - strand at 486.738 kb on + strand at 487.046 kb on - strand, within BPHYT_RS21975 at 487.132 kb on + strand, within BPHYT_RS21975 at 487.631 kb on + strand at 487.632 kb on - strand at 487.632 kb on - strand at 488.050 kb on - strand at 488.173 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 485,822 - BPHYT_RS21970 0.29 -0.6 486,266 + BPHYT_RS21970 0.75 -0.5 486,267 - BPHYT_RS21970 0.75 -0.6 486,342 + BPHYT_RS21970 0.83 -0.2 486,636 + -0.9 486,736 - +0.5 486,738 + +0.1 487,046 - BPHYT_RS21975 0.34 +0.4 487,132 + BPHYT_RS21975 0.43 +1.1 487,631 + +0.2 487,632 - -0.1 487,632 - -0.3 488,050 - -0.6 488,173 + -1.0
Or see this region's nucleotide sequence