Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21905

Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21900 and BPHYT_RS21905 are separated by 187 nucleotidesBPHYT_RS21905 and BPHYT_RS21910 are separated by 75 nucleotidesBPHYT_RS21910 and BPHYT_RS21915 are separated by 17 nucleotides BPHYT_RS21900: BPHYT_RS21900 - transglutaminase, at 472,018 to 472,908 _RS21900 BPHYT_RS21905: BPHYT_RS21905 - IclR family transcriptional regulator, at 473,096 to 473,845 _RS21905 BPHYT_RS21910: BPHYT_RS21910 - ABC transporter permease, at 473,921 to 474,676 _RS21910 BPHYT_RS21915: BPHYT_RS21915 - ABC transporter permease, at 474,694 to 475,362 _RS21915 Position (kb) 473 474Strain fitness (log2 ratio) -2 -1 0 1at 472.179 kb on + strand, within BPHYT_RS21900at 472.180 kb on - strand, within BPHYT_RS21900at 472.180 kb on - strand, within BPHYT_RS21900at 472.519 kb on + strand, within BPHYT_RS21900at 472.646 kb on - strand, within BPHYT_RS21900at 473.697 kb on + strand, within BPHYT_RS21905at 474.212 kb on + strand, within BPHYT_RS21910at 474.213 kb on - strand, within BPHYT_RS21910at 474.485 kb on + strand, within BPHYT_RS21910at 474.738 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
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472,179 + BPHYT_RS21900 0.18 +0.2
472,180 - BPHYT_RS21900 0.18 -1.0
472,180 - BPHYT_RS21900 0.18 -0.2
472,519 + BPHYT_RS21900 0.56 +0.4
472,646 - BPHYT_RS21900 0.70 -0.4
473,697 + BPHYT_RS21905 0.80 -2.1
474,212 + BPHYT_RS21910 0.38 +0.3
474,213 - BPHYT_RS21910 0.39 +0.2
474,485 + BPHYT_RS21910 0.75 -0.2
474,738 - -0.6

Or see this region's nucleotide sequence