Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21775

Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS21770 and BPHYT_RS21775 overlap by 4 nucleotidesBPHYT_RS21775 and BPHYT_RS21780 are separated by 63 nucleotides BPHYT_RS21770: BPHYT_RS21770 - aldehyde dehydrogenase, at 439,835 to 441,280 _RS21770 BPHYT_RS21775: BPHYT_RS21775 - long-chain fatty acid--CoA ligase, at 441,277 to 442,938 _RS21775 BPHYT_RS21780: BPHYT_RS21780 - MFS transporter, at 443,002 to 444,384 _RS21780 Position (kb) 441 442 443Strain fitness (log2 ratio) -1 0 1 2 3at 440.655 kb on - strand, within BPHYT_RS21770at 441.541 kb on + strand, within BPHYT_RS21775at 441.542 kb on - strand, within BPHYT_RS21775at 441.542 kb on - strand, within BPHYT_RS21775at 441.598 kb on + strand, within BPHYT_RS21775at 441.599 kb on - strand, within BPHYT_RS21775at 441.601 kb on - strand, within BPHYT_RS21775at 442.199 kb on - strand, within BPHYT_RS21775at 442.519 kb on + strand, within BPHYT_RS21775at 442.982 kb on + strandat 442.983 kb on - strandat 443.037 kb on + strandat 443.038 kb on - strandat 443.876 kb on - strand, within BPHYT_RS21780

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
remove
440,655 - BPHYT_RS21770 0.57 -0.6
441,541 + BPHYT_RS21775 0.16 +1.1
441,542 - BPHYT_RS21775 0.16 +0.1
441,542 - BPHYT_RS21775 0.16 -0.3
441,598 + BPHYT_RS21775 0.19 +3.4
441,599 - BPHYT_RS21775 0.19 +0.5
441,601 - BPHYT_RS21775 0.19 +0.1
442,199 - BPHYT_RS21775 0.55 +0.0
442,519 + BPHYT_RS21775 0.75 +0.3
442,982 + -0.1
442,983 - +0.6
443,037 + -0.5
443,038 - +0.0
443,876 - BPHYT_RS21780 0.63 +0.6

Or see this region's nucleotide sequence