Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20785 and BPHYT_RS20790 are separated by 130 nucleotides BPHYT_RS20790 and BPHYT_RS20795 are separated by 246 nucleotides
BPHYT_RS20785: BPHYT_RS20785 - CoA-transferase, at 224,526 to 226,013
_RS20785
BPHYT_RS20790: BPHYT_RS20790 - TetR family transcriptional regulator, at 226,144 to 226,794
_RS20790
BPHYT_RS20795: BPHYT_RS20795 - sorbosone dehydrogenase, at 227,041 to 228,549
_RS20795
Position (kb) 226
227 Strain fitness (log2 ratio) -1
0
1 at 225.180 kb on + strand, within BPHYT_RS20785 at 225.180 kb on + strand, within BPHYT_RS20785 at 225.181 kb on - strand, within BPHYT_RS20785 at 225.181 kb on - strand, within BPHYT_RS20785 at 225.830 kb on + strand, within BPHYT_RS20785 at 225.876 kb on + strand at 225.876 kb on + strand at 225.876 kb on + strand at 225.974 kb on + strand at 225.975 kb on - strand at 226.571 kb on + strand, within BPHYT_RS20790 at 226.625 kb on + strand, within BPHYT_RS20790 at 226.897 kb on - strand at 227.425 kb on + strand, within BPHYT_RS20795 at 227.634 kb on + strand, within BPHYT_RS20795 at 227.635 kb on - strand, within BPHYT_RS20795 at 227.742 kb on + strand, within BPHYT_RS20795 at 227.742 kb on + strand, within BPHYT_RS20795 at 227.743 kb on - strand, within BPHYT_RS20795
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 225,180 + BPHYT_RS20785 0.44 -0.5 225,180 + BPHYT_RS20785 0.44 -0.1 225,181 - BPHYT_RS20785 0.44 +1.6 225,181 - BPHYT_RS20785 0.44 -0.4 225,830 + BPHYT_RS20785 0.88 +1.5 225,876 + -0.3 225,876 + +0.2 225,876 + -0.2 225,974 + -0.7 225,975 - -0.0 226,571 + BPHYT_RS20790 0.66 -1.2 226,625 + BPHYT_RS20790 0.74 -1.3 226,897 - +1.7 227,425 + BPHYT_RS20795 0.25 +0.1 227,634 + BPHYT_RS20795 0.39 +0.2 227,635 - BPHYT_RS20795 0.39 -0.1 227,742 + BPHYT_RS20795 0.46 +0.4 227,742 + BPHYT_RS20795 0.46 -0.5 227,743 - BPHYT_RS20795 0.47 +0.4
Or see this region's nucleotide sequence