Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20390 and BPHYT_RS20395 are separated by 80 nucleotides BPHYT_RS20395 and BPHYT_RS20400 are separated by 258 nucleotides
BPHYT_RS20390: BPHYT_RS20390 - oxidoreductase, at 136,840 to 137,961
_RS20390
BPHYT_RS20395: BPHYT_RS20395 - short-chain dehydrogenase, at 138,042 to 138,788
_RS20395
BPHYT_RS20400: BPHYT_RS20400 - GntR family transcriptional regulator, at 139,047 to 139,757
_RS20400
Position (kb) 138
139 Strain fitness (log2 ratio) -1
0
1
2
3 at 137.387 kb on + strand, within BPHYT_RS20390 at 137.388 kb on - strand, within BPHYT_RS20390 at 137.404 kb on - strand, within BPHYT_RS20390 at 137.463 kb on - strand, within BPHYT_RS20390 at 137.486 kb on - strand, within BPHYT_RS20390 at 137.507 kb on + strand, within BPHYT_RS20390 at 137.508 kb on - strand, within BPHYT_RS20390 at 137.777 kb on + strand, within BPHYT_RS20390 at 137.778 kb on - strand, within BPHYT_RS20390 at 137.876 kb on - strand at 137.876 kb on - strand at 138.043 kb on + strand at 138.044 kb on - strand at 138.289 kb on + strand, within BPHYT_RS20395 at 138.290 kb on - strand, within BPHYT_RS20395 at 138.337 kb on + strand, within BPHYT_RS20395 at 138.338 kb on - strand, within BPHYT_RS20395 at 138.633 kb on + strand, within BPHYT_RS20395 at 138.633 kb on + strand, within BPHYT_RS20395 at 138.634 kb on - strand, within BPHYT_RS20395 at 138.634 kb on - strand, within BPHYT_RS20395 at 138.768 kb on - strand at 138.768 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 137,387 + BPHYT_RS20390 0.49 +0.0 137,388 - BPHYT_RS20390 0.49 -0.2 137,404 - BPHYT_RS20390 0.50 +0.1 137,463 - BPHYT_RS20390 0.56 -0.2 137,486 - BPHYT_RS20390 0.58 -0.3 137,507 + BPHYT_RS20390 0.59 +0.0 137,508 - BPHYT_RS20390 0.60 +0.2 137,777 + BPHYT_RS20390 0.84 -0.2 137,778 - BPHYT_RS20390 0.84 -1.0 137,876 - +0.2 137,876 - +0.0 138,043 + +0.7 138,044 - +0.0 138,289 + BPHYT_RS20395 0.33 +0.3 138,290 - BPHYT_RS20395 0.33 +0.3 138,337 + BPHYT_RS20395 0.39 -0.1 138,338 - BPHYT_RS20395 0.40 -0.6 138,633 + BPHYT_RS20395 0.79 +3.2 138,633 + BPHYT_RS20395 0.79 +0.4 138,634 - BPHYT_RS20395 0.79 +0.9 138,634 - BPHYT_RS20395 0.79 +1.7 138,768 - -0.3 138,768 - +1.0
Or see this region's nucleotide sequence