Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18250 and BPHYT_RS18255 are separated by 38 nucleotides BPHYT_RS18255 and BPHYT_RS18260 are separated by 8 nucleotides BPHYT_RS18260 and BPHYT_RS18265 are separated by 7 nucleotides
BPHYT_RS18250: BPHYT_RS18250 - phenylacetate-CoA oxygenase subunit PaaA, at 4,105,416 to 4,106,414
_RS18250
BPHYT_RS18255: BPHYT_RS18255 - phenylacetate-CoA oxygenase subunit PaaB, at 4,106,453 to 4,106,737
_RS18255
BPHYT_RS18260: BPHYT_RS18260 - phenylacetic acid degradation protein, at 4,106,746 to 4,107,549
_RS18260
BPHYT_RS18265: BPHYT_RS18265 - phenylacetate-CoA oxygenase subunit PaaJ, at 4,107,557 to 4,108,108
_RS18265
Position (kb) 4106
4107 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4105.707 kb on + strand, within BPHYT_RS18250 at 4105.711 kb on + strand, within BPHYT_RS18250 at 4105.711 kb on + strand, within BPHYT_RS18250 at 4105.712 kb on - strand, within BPHYT_RS18250 at 4105.713 kb on + strand, within BPHYT_RS18250 at 4105.715 kb on + strand, within BPHYT_RS18250 at 4105.785 kb on + strand, within BPHYT_RS18250 at 4105.785 kb on + strand, within BPHYT_RS18250 at 4105.786 kb on - strand, within BPHYT_RS18250 at 4105.803 kb on + strand, within BPHYT_RS18250 at 4105.896 kb on + strand, within BPHYT_RS18250 at 4106.423 kb on + strand at 4106.491 kb on + strand, within BPHYT_RS18255 at 4106.576 kb on + strand, within BPHYT_RS18255 at 4106.577 kb on - strand, within BPHYT_RS18255 at 4106.687 kb on + strand, within BPHYT_RS18255 at 4106.735 kb on + strand at 4106.735 kb on + strand at 4106.736 kb on - strand at 4106.736 kb on - strand at 4106.971 kb on + strand, within BPHYT_RS18260 at 4106.971 kb on + strand, within BPHYT_RS18260 at 4107.007 kb on + strand, within BPHYT_RS18260 at 4107.007 kb on + strand, within BPHYT_RS18260 at 4107.007 kb on + strand, within BPHYT_RS18260 at 4107.101 kb on - strand, within BPHYT_RS18260 at 4107.101 kb on - strand, within BPHYT_RS18260 at 4107.196 kb on + strand, within BPHYT_RS18260 at 4107.196 kb on + strand, within BPHYT_RS18260 at 4107.196 kb on + strand, within BPHYT_RS18260 at 4107.196 kb on + strand, within BPHYT_RS18260 at 4107.197 kb on - strand, within BPHYT_RS18260 at 4107.283 kb on + strand, within BPHYT_RS18260 at 4107.283 kb on + strand, within BPHYT_RS18260 at 4107.547 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 4,105,707 + BPHYT_RS18250 0.29 -0.9 4,105,711 + BPHYT_RS18250 0.30 -2.2 4,105,711 + BPHYT_RS18250 0.30 -0.5 4,105,712 - BPHYT_RS18250 0.30 -1.5 4,105,713 + BPHYT_RS18250 0.30 -1.0 4,105,715 + BPHYT_RS18250 0.30 -1.5 4,105,785 + BPHYT_RS18250 0.37 -0.0 4,105,785 + BPHYT_RS18250 0.37 -1.3 4,105,786 - BPHYT_RS18250 0.37 -2.4 4,105,803 + BPHYT_RS18250 0.39 +0.3 4,105,896 + BPHYT_RS18250 0.48 -0.5 4,106,423 + +0.4 4,106,491 + BPHYT_RS18255 0.13 -1.3 4,106,576 + BPHYT_RS18255 0.43 -2.7 4,106,577 - BPHYT_RS18255 0.44 -2.4 4,106,687 + BPHYT_RS18255 0.82 +0.1 4,106,735 + +0.6 4,106,735 + -1.0 4,106,736 - -1.9 4,106,736 - -1.0 4,106,971 + BPHYT_RS18260 0.28 -3.0 4,106,971 + BPHYT_RS18260 0.28 -2.4 4,107,007 + BPHYT_RS18260 0.32 -2.7 4,107,007 + BPHYT_RS18260 0.32 -1.7 4,107,007 + BPHYT_RS18260 0.32 -0.5 4,107,101 - BPHYT_RS18260 0.44 -0.6 4,107,101 - BPHYT_RS18260 0.44 -1.3 4,107,196 + BPHYT_RS18260 0.56 +1.3 4,107,196 + BPHYT_RS18260 0.56 -1.4 4,107,196 + BPHYT_RS18260 0.56 -1.7 4,107,196 + BPHYT_RS18260 0.56 -0.8 4,107,197 - BPHYT_RS18260 0.56 -2.2 4,107,283 + BPHYT_RS18260 0.67 -1.4 4,107,283 + BPHYT_RS18260 0.67 -1.3 4,107,547 + +1.0
Or see this region's nucleotide sequence