Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS17865 and BPHYT_RS17870 overlap by 4 nucleotides BPHYT_RS17870 and BPHYT_RS17875 are separated by 80 nucleotides BPHYT_RS17875 and BPHYT_RS17880 are separated by 125 nucleotides BPHYT_RS17880 and BPHYT_RS17885 are separated by 71 nucleotides
BPHYT_RS17865: BPHYT_RS17865 - membrane protein, at 4,035,717 to 4,036,442
_RS17865
BPHYT_RS17870: BPHYT_RS17870 - hypothetical protein, at 4,036,439 to 4,036,711
_RS17870
BPHYT_RS17875: BPHYT_RS17875 - hypothetical protein, at 4,036,792 to 4,037,172
_RS17875
BPHYT_RS17880: BPHYT_RS17880 - deoxyguanosinetriphosphate triphosphohydrolase, at 4,037,298 to 4,038,503
_RS17880
BPHYT_RS17885: BPHYT_RS17885 - 3-dehydroquinate synthase, at 4,038,575 to 4,039,660
_RS17885
Position (kb) 4037
4038
4039 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4036.308 kb on + strand, within BPHYT_RS17865 at 4036.416 kb on + strand at 4036.471 kb on + strand, within BPHYT_RS17870 at 4036.471 kb on + strand, within BPHYT_RS17870 at 4036.471 kb on + strand, within BPHYT_RS17870 at 4036.471 kb on + strand, within BPHYT_RS17870 at 4036.472 kb on - strand, within BPHYT_RS17870 at 4036.472 kb on - strand, within BPHYT_RS17870 at 4036.477 kb on - strand, within BPHYT_RS17870 at 4036.637 kb on + strand, within BPHYT_RS17870 at 4036.637 kb on + strand, within BPHYT_RS17870 at 4036.737 kb on - strand at 4036.810 kb on - strand at 4036.863 kb on + strand, within BPHYT_RS17875 at 4036.897 kb on - strand, within BPHYT_RS17875 at 4036.919 kb on + strand, within BPHYT_RS17875 at 4036.920 kb on - strand, within BPHYT_RS17875 at 4036.992 kb on + strand, within BPHYT_RS17875 at 4036.993 kb on - strand, within BPHYT_RS17875 at 4037.083 kb on + strand, within BPHYT_RS17875 at 4037.083 kb on + strand, within BPHYT_RS17875 at 4037.084 kb on - strand, within BPHYT_RS17875 at 4037.193 kb on - strand at 4037.241 kb on - strand at 4037.242 kb on + strand at 4037.243 kb on - strand at 4037.243 kb on - strand at 4037.329 kb on + strand at 4037.493 kb on - strand, within BPHYT_RS17880 at 4037.493 kb on - strand, within BPHYT_RS17880 at 4037.675 kb on + strand, within BPHYT_RS17880 at 4037.675 kb on + strand, within BPHYT_RS17880 at 4037.675 kb on + strand, within BPHYT_RS17880 at 4037.676 kb on - strand, within BPHYT_RS17880 at 4037.753 kb on - strand, within BPHYT_RS17880 at 4037.839 kb on + strand, within BPHYT_RS17880 at 4037.839 kb on + strand, within BPHYT_RS17880 at 4037.839 kb on + strand, within BPHYT_RS17880 at 4037.840 kb on - strand, within BPHYT_RS17880 at 4037.840 kb on - strand, within BPHYT_RS17880 at 4037.840 kb on - strand, within BPHYT_RS17880 at 4038.007 kb on + strand, within BPHYT_RS17880 at 4038.007 kb on + strand, within BPHYT_RS17880 at 4038.119 kb on + strand, within BPHYT_RS17880 at 4038.119 kb on + strand, within BPHYT_RS17880 at 4038.120 kb on - strand, within BPHYT_RS17880 at 4038.120 kb on - strand, within BPHYT_RS17880 at 4038.477 kb on + strand at 4038.478 kb on - strand at 4038.711 kb on + strand, within BPHYT_RS17885 at 4038.712 kb on - strand, within BPHYT_RS17885 at 4038.813 kb on - strand, within BPHYT_RS17885 at 4039.179 kb on + strand, within BPHYT_RS17885 at 4039.299 kb on + strand, within BPHYT_RS17885 at 4039.300 kb on - strand, within BPHYT_RS17885 at 4039.428 kb on + strand, within BPHYT_RS17885 at 4039.429 kb on - strand, within BPHYT_RS17885 at 4039.429 kb on - strand, within BPHYT_RS17885
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 4,036,308 + BPHYT_RS17865 0.81 -0.5 4,036,416 + +0.5 4,036,471 + BPHYT_RS17870 0.12 +0.4 4,036,471 + BPHYT_RS17870 0.12 +0.4 4,036,471 + BPHYT_RS17870 0.12 -0.2 4,036,471 + BPHYT_RS17870 0.12 +0.4 4,036,472 - BPHYT_RS17870 0.12 -0.8 4,036,472 - BPHYT_RS17870 0.12 -1.7 4,036,477 - BPHYT_RS17870 0.14 +0.3 4,036,637 + BPHYT_RS17870 0.73 -1.0 4,036,637 + BPHYT_RS17870 0.73 -0.3 4,036,737 - -0.7 4,036,810 - -0.2 4,036,863 + BPHYT_RS17875 0.19 -0.2 4,036,897 - BPHYT_RS17875 0.28 -0.3 4,036,919 + BPHYT_RS17875 0.33 -0.2 4,036,920 - BPHYT_RS17875 0.34 -0.4 4,036,992 + BPHYT_RS17875 0.52 -0.5 4,036,993 - BPHYT_RS17875 0.53 +2.3 4,037,083 + BPHYT_RS17875 0.76 +0.7 4,037,083 + BPHYT_RS17875 0.76 +0.3 4,037,084 - BPHYT_RS17875 0.77 +0.9 4,037,193 - -0.1 4,037,241 - -0.4 4,037,242 + -0.7 4,037,243 - +0.1 4,037,243 - -0.8 4,037,329 + -1.0 4,037,493 - BPHYT_RS17880 0.16 +0.0 4,037,493 - BPHYT_RS17880 0.16 +2.0 4,037,675 + BPHYT_RS17880 0.31 -0.8 4,037,675 + BPHYT_RS17880 0.31 +0.2 4,037,675 + BPHYT_RS17880 0.31 +1.3 4,037,676 - BPHYT_RS17880 0.31 +0.3 4,037,753 - BPHYT_RS17880 0.38 +0.1 4,037,839 + BPHYT_RS17880 0.45 +0.1 4,037,839 + BPHYT_RS17880 0.45 -0.4 4,037,839 + BPHYT_RS17880 0.45 -1.4 4,037,840 - BPHYT_RS17880 0.45 +1.0 4,037,840 - BPHYT_RS17880 0.45 -0.1 4,037,840 - BPHYT_RS17880 0.45 +0.9 4,038,007 + BPHYT_RS17880 0.59 +0.6 4,038,007 + BPHYT_RS17880 0.59 +0.4 4,038,119 + BPHYT_RS17880 0.68 -0.4 4,038,119 + BPHYT_RS17880 0.68 +0.1 4,038,120 - BPHYT_RS17880 0.68 +0.4 4,038,120 - BPHYT_RS17880 0.68 +0.0 4,038,477 + +0.3 4,038,478 - +0.1 4,038,711 + BPHYT_RS17885 0.13 -2.0 4,038,712 - BPHYT_RS17885 0.13 -2.6 4,038,813 - BPHYT_RS17885 0.22 -1.0 4,039,179 + BPHYT_RS17885 0.56 -3.6 4,039,299 + BPHYT_RS17885 0.67 -3.4 4,039,300 - BPHYT_RS17885 0.67 -2.3 4,039,428 + BPHYT_RS17885 0.79 -3.4 4,039,429 - BPHYT_RS17885 0.79 -1.7 4,039,429 - BPHYT_RS17885 0.79 -2.8
Or see this region's nucleotide sequence