Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11125

Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11120 and BPHYT_RS11125 are separated by 239 nucleotidesBPHYT_RS11125 and BPHYT_RS11130 are separated by 36 nucleotides BPHYT_RS11120: BPHYT_RS11120 - ferredoxin--NADP reductase, at 2,526,932 to 2,527,981 _RS11120 BPHYT_RS11125: BPHYT_RS11125 - alkylhydroperoxidase, at 2,528,221 to 2,528,658 _RS11125 BPHYT_RS11130: BPHYT_RS11130 - chemotaxis protein, at 2,528,695 to 2,530,269 _RS11130 Position (kb) 2528 2529Strain fitness (log2 ratio) -1 0 1 2at 2528.002 kb on + strandat 2528.003 kb on - strandat 2528.003 kb on - strandat 2528.243 kb on - strandat 2528.369 kb on - strand, within BPHYT_RS11125at 2528.823 kb on + strandat 2528.920 kb on - strand, within BPHYT_RS11130

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
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2,528,002 + -1.0
2,528,003 - +0.3
2,528,003 - +0.3
2,528,243 - +0.7
2,528,369 - BPHYT_RS11125 0.34 +2.7
2,528,823 + +0.4
2,528,920 - BPHYT_RS11130 0.14 -0.4

Or see this region's nucleotide sequence