Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS08085 and BPHYT_RS08090 are separated by 31 nucleotides BPHYT_RS08090 and BPHYT_RS08095 are separated by 81 nucleotides
BPHYT_RS08085: BPHYT_RS08085 - DSBA oxidoreductase, at 1,844,505 to 1,846,067
_RS08085
BPHYT_RS08090: BPHYT_RS08090 - hemolysin D, at 1,846,099 to 1,847,373
_RS08090
BPHYT_RS08095: BPHYT_RS08095 - MarR family transcriptional regulator, at 1,847,455 to 1,848,963
_RS08095
Position (kb) 1846
1847
1848 Strain fitness (log2 ratio) -1
0
1
2
3 at 1845.148 kb on + strand, within BPHYT_RS08085 at 1845.264 kb on + strand, within BPHYT_RS08085 at 1845.265 kb on - strand, within BPHYT_RS08085 at 1845.658 kb on + strand, within BPHYT_RS08085 at 1845.658 kb on + strand, within BPHYT_RS08085 at 1845.658 kb on + strand, within BPHYT_RS08085 at 1845.720 kb on + strand, within BPHYT_RS08085 at 1845.721 kb on - strand, within BPHYT_RS08085 at 1846.100 kb on + strand at 1846.101 kb on - strand at 1846.101 kb on - strand at 1846.101 kb on - strand at 1846.101 kb on - strand at 1846.220 kb on + strand at 1846.245 kb on - strand, within BPHYT_RS08090 at 1846.251 kb on + strand, within BPHYT_RS08090 at 1846.497 kb on - strand, within BPHYT_RS08090 at 1846.549 kb on + strand, within BPHYT_RS08090 at 1846.549 kb on + strand, within BPHYT_RS08090 at 1846.549 kb on + strand, within BPHYT_RS08090 at 1847.166 kb on - strand, within BPHYT_RS08090 at 1847.211 kb on - strand, within BPHYT_RS08090 at 1847.220 kb on - strand, within BPHYT_RS08090 at 1847.672 kb on + strand, within BPHYT_RS08095 at 1847.693 kb on + strand, within BPHYT_RS08095 at 1847.811 kb on - strand, within BPHYT_RS08095 at 1848.371 kb on + strand, within BPHYT_RS08095
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 1,845,148 + BPHYT_RS08085 0.41 +0.9 1,845,264 + BPHYT_RS08085 0.49 +0.1 1,845,265 - BPHYT_RS08085 0.49 -0.1 1,845,658 + BPHYT_RS08085 0.74 +0.1 1,845,658 + BPHYT_RS08085 0.74 -0.8 1,845,658 + BPHYT_RS08085 0.74 -0.1 1,845,720 + BPHYT_RS08085 0.78 -0.4 1,845,721 - BPHYT_RS08085 0.78 -0.3 1,846,100 + +0.3 1,846,101 - -0.3 1,846,101 - -0.4 1,846,101 - +0.1 1,846,101 - +1.0 1,846,220 + -0.6 1,846,245 - BPHYT_RS08090 0.11 +1.2 1,846,251 + BPHYT_RS08090 0.12 +1.0 1,846,497 - BPHYT_RS08090 0.31 +0.8 1,846,549 + BPHYT_RS08090 0.35 -0.9 1,846,549 + BPHYT_RS08090 0.35 +0.6 1,846,549 + BPHYT_RS08090 0.35 +0.4 1,847,166 - BPHYT_RS08090 0.84 +0.1 1,847,211 - BPHYT_RS08090 0.87 +3.1 1,847,220 - BPHYT_RS08090 0.88 +0.4 1,847,672 + BPHYT_RS08095 0.14 +0.6 1,847,693 + BPHYT_RS08095 0.16 +0.8 1,847,811 - BPHYT_RS08095 0.24 -0.1 1,848,371 + BPHYT_RS08095 0.61 -0.6
Or see this region's nucleotide sequence