Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06270

Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS06260 and BPHYT_RS06265 are separated by 157 nucleotidesBPHYT_RS06265 and BPHYT_RS06270 are separated by 36 nucleotidesBPHYT_RS06270 and BPHYT_RS06275 are separated by 129 nucleotides BPHYT_RS06260: BPHYT_RS06260 - MFS transporter, at 1,428,615 to 1,429,826 _RS06260 BPHYT_RS06265: BPHYT_RS06265 - 3-demethylubiquinone-9 3-methyltransferase, at 1,429,984 to 1,430,457 _RS06265 BPHYT_RS06270: BPHYT_RS06270 - glyoxalase, at 1,430,494 to 1,430,961 _RS06270 BPHYT_RS06275: BPHYT_RS06275 - hydrolase, at 1,431,091 to 1,432,686 _RS06275 Position (kb) 1430 1431Strain fitness (log2 ratio) -1 0 1 2at 1429.865 kb on - strandat 1430.351 kb on + strand, within BPHYT_RS06265at 1430.351 kb on + strand, within BPHYT_RS06265at 1430.396 kb on + strand, within BPHYT_RS06265at 1430.397 kb on - strand, within BPHYT_RS06265at 1430.571 kb on + strand, within BPHYT_RS06270at 1430.601 kb on - strand, within BPHYT_RS06270at 1430.693 kb on + strand, within BPHYT_RS06270at 1430.694 kb on - strand, within BPHYT_RS06270at 1430.696 kb on + strand, within BPHYT_RS06270at 1431.040 kb on + strandat 1431.283 kb on + strand, within BPHYT_RS06275at 1431.283 kb on + strand, within BPHYT_RS06275at 1431.284 kb on - strand, within BPHYT_RS06275at 1431.338 kb on + strand, within BPHYT_RS06275at 1431.338 kb on + strand, within BPHYT_RS06275at 1431.362 kb on + strand, within BPHYT_RS06275at 1431.401 kb on + strand, within BPHYT_RS06275at 1431.700 kb on + strand, within BPHYT_RS06275at 1431.906 kb on + strand, within BPHYT_RS06275at 1431.906 kb on + strand, within BPHYT_RS06275at 1431.906 kb on + strand, within BPHYT_RS06275at 1431.907 kb on - strand, within BPHYT_RS06275

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
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1,429,865 - -1.3
1,430,351 + BPHYT_RS06265 0.77 +1.8
1,430,351 + BPHYT_RS06265 0.77 +2.4
1,430,396 + BPHYT_RS06265 0.87 +0.1
1,430,397 - BPHYT_RS06265 0.87 -1.1
1,430,571 + BPHYT_RS06270 0.16 +0.6
1,430,601 - BPHYT_RS06270 0.23 -0.2
1,430,693 + BPHYT_RS06270 0.43 +0.4
1,430,694 - BPHYT_RS06270 0.43 -0.5
1,430,696 + BPHYT_RS06270 0.43 +0.2
1,431,040 + +0.2
1,431,283 + BPHYT_RS06275 0.12 +0.1
1,431,283 + BPHYT_RS06275 0.12 +0.7
1,431,284 - BPHYT_RS06275 0.12 -0.2
1,431,338 + BPHYT_RS06275 0.15 +0.8
1,431,338 + BPHYT_RS06275 0.15 +0.5
1,431,362 + BPHYT_RS06275 0.17 +0.1
1,431,401 + BPHYT_RS06275 0.19 -0.5
1,431,700 + BPHYT_RS06275 0.38 -0.2
1,431,906 + BPHYT_RS06275 0.51 +1.8
1,431,906 + BPHYT_RS06275 0.51 +0.7
1,431,906 + BPHYT_RS06275 0.51 -0.2
1,431,907 - BPHYT_RS06275 0.51 +0.4

Or see this region's nucleotide sequence