Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05120

Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS05115 and BPHYT_RS05120 overlap by 4 nucleotidesBPHYT_RS05120 and BPHYT_RS05125 are separated by 12 nucleotides BPHYT_RS05115: BPHYT_RS05115 - NADH-ubiquinone oxidoreductase subunit 6, at 1,180,155 to 1,181,456 _RS05115 BPHYT_RS05120: BPHYT_RS05120 - hypothetical protein, at 1,181,453 to 1,182,304 _RS05120 BPHYT_RS05125: BPHYT_RS05125 - cyclopropane-fatty-acyl-phospholipid synthase, at 1,182,317 to 1,183,528 _RS05125 Position (kb) 1181 1182 1183Strain fitness (log2 ratio) -2 -1 0 1at 1180.831 kb on - strand, within BPHYT_RS05115at 1180.831 kb on - strand, within BPHYT_RS05115at 1180.841 kb on + strand, within BPHYT_RS05115at 1180.841 kb on + strand, within BPHYT_RS05115at 1180.841 kb on + strand, within BPHYT_RS05115at 1180.842 kb on - strand, within BPHYT_RS05115at 1180.843 kb on + strand, within BPHYT_RS05115at 1180.844 kb on - strand, within BPHYT_RS05115at 1181.040 kb on + strand, within BPHYT_RS05115at 1181.119 kb on - strand, within BPHYT_RS05115at 1181.166 kb on + strand, within BPHYT_RS05115at 1181.182 kb on + strand, within BPHYT_RS05115at 1181.452 kb on + strandat 1181.555 kb on + strand, within BPHYT_RS05120at 1181.556 kb on - strand, within BPHYT_RS05120at 1181.568 kb on - strand, within BPHYT_RS05120at 1181.710 kb on - strand, within BPHYT_RS05120at 1181.710 kb on - strand, within BPHYT_RS05120at 1181.880 kb on - strand, within BPHYT_RS05120at 1181.880 kb on - strand, within BPHYT_RS05120at 1181.880 kb on - strand, within BPHYT_RS05120at 1181.982 kb on - strand, within BPHYT_RS05120at 1182.032 kb on + strand, within BPHYT_RS05120at 1182.569 kb on - strand, within BPHYT_RS05125at 1182.728 kb on + strand, within BPHYT_RS05125at 1182.728 kb on + strand, within BPHYT_RS05125at 1182.729 kb on - strand, within BPHYT_RS05125at 1182.729 kb on - strand, within BPHYT_RS05125at 1182.750 kb on - strand, within BPHYT_RS05125at 1182.780 kb on - strand, within BPHYT_RS05125at 1182.842 kb on + strand, within BPHYT_RS05125at 1182.842 kb on + strand, within BPHYT_RS05125at 1182.859 kb on + strand, within BPHYT_RS05125at 1183.071 kb on - strand, within BPHYT_RS05125

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
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1,180,831 - BPHYT_RS05115 0.52 -2.0
1,180,831 - BPHYT_RS05115 0.52 -0.2
1,180,841 + BPHYT_RS05115 0.53 -0.8
1,180,841 + BPHYT_RS05115 0.53 -0.3
1,180,841 + BPHYT_RS05115 0.53 -0.7
1,180,842 - BPHYT_RS05115 0.53 -0.4
1,180,843 + BPHYT_RS05115 0.53 -0.5
1,180,844 - BPHYT_RS05115 0.53 -0.1
1,181,040 + BPHYT_RS05115 0.68 +0.8
1,181,119 - BPHYT_RS05115 0.74 +0.5
1,181,166 + BPHYT_RS05115 0.78 -0.3
1,181,182 + BPHYT_RS05115 0.79 -0.0
1,181,452 + +0.1
1,181,555 + BPHYT_RS05120 0.12 -0.6
1,181,556 - BPHYT_RS05120 0.12 -0.7
1,181,568 - BPHYT_RS05120 0.13 -0.2
1,181,710 - BPHYT_RS05120 0.30 -1.0
1,181,710 - BPHYT_RS05120 0.30 -0.4
1,181,880 - BPHYT_RS05120 0.50 +1.6
1,181,880 - BPHYT_RS05120 0.50 -0.2
1,181,880 - BPHYT_RS05120 0.50 -0.4
1,181,982 - BPHYT_RS05120 0.62 +0.1
1,182,032 + BPHYT_RS05120 0.68 -0.9
1,182,569 - BPHYT_RS05125 0.21 +0.1
1,182,728 + BPHYT_RS05125 0.34 -0.5
1,182,728 + BPHYT_RS05125 0.34 -0.3
1,182,729 - BPHYT_RS05125 0.34 +0.5
1,182,729 - BPHYT_RS05125 0.34 -1.1
1,182,750 - BPHYT_RS05125 0.36 +0.8
1,182,780 - BPHYT_RS05125 0.38 -2.1
1,182,842 + BPHYT_RS05125 0.43 -0.3
1,182,842 + BPHYT_RS05125 0.43 -0.5
1,182,859 + BPHYT_RS05125 0.45 -1.3
1,183,071 - BPHYT_RS05125 0.62 -0.0

Or see this region's nucleotide sequence