Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04500 and BPHYT_RS04505 overlap by 14 nucleotides BPHYT_RS04505 and BPHYT_RS04510 are separated by 2 nucleotides BPHYT_RS04510 and BPHYT_RS04515 are separated by 58 nucleotides BPHYT_RS04515 and BPHYT_RS04520 are separated by 15 nucleotides BPHYT_RS04520 and BPHYT_RS04525 are separated by 175 nucleotides
BPHYT_RS04500: BPHYT_RS04500 - urease accessory protein UreF, at 1,040,347 to 1,041,027
_RS04500
BPHYT_RS04505: BPHYT_RS04505 - urease accessory protein UreE, at 1,041,014 to 1,041,697
_RS04505
BPHYT_RS04510: BPHYT_RS04510 - urease subunit alpha, at 1,041,700 to 1,043,406
_RS04510
BPHYT_RS04515: BPHYT_RS04515 - urease subunit beta, at 1,043,465 to 1,043,770
_RS04515
BPHYT_RS04520: BPHYT_RS04520 - urease subunit gamma, at 1,043,786 to 1,044,088
_RS04520
BPHYT_RS04525: BPHYT_RS04525 - amino acid ABC transporter substrate-binding protein, at 1,044,264 to 1,045,067
_RS04525
Position (kb) 1041
1042
1043
1044 Strain fitness (log2 ratio) -1
0
1
2
3 at 1040.958 kb on - strand, within BPHYT_RS04500 at 1041.411 kb on + strand, within BPHYT_RS04505 at 1041.512 kb on + strand, within BPHYT_RS04505 at 1041.512 kb on + strand, within BPHYT_RS04505 at 1041.513 kb on - strand, within BPHYT_RS04505 at 1041.513 kb on - strand, within BPHYT_RS04505 at 1041.713 kb on + strand at 1041.850 kb on - strand at 1042.196 kb on + strand, within BPHYT_RS04510 at 1042.592 kb on + strand, within BPHYT_RS04510 at 1042.592 kb on + strand, within BPHYT_RS04510 at 1043.002 kb on - strand, within BPHYT_RS04510 at 1044.155 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 1,040,958 - BPHYT_RS04500 0.90 +0.4 1,041,411 + BPHYT_RS04505 0.58 +1.5 1,041,512 + BPHYT_RS04505 0.73 -0.7 1,041,512 + BPHYT_RS04505 0.73 +0.0 1,041,513 - BPHYT_RS04505 0.73 +0.1 1,041,513 - BPHYT_RS04505 0.73 +0.2 1,041,713 + +0.1 1,041,850 - -0.1 1,042,196 + BPHYT_RS04510 0.29 +0.1 1,042,592 + BPHYT_RS04510 0.52 +3.4 1,042,592 + BPHYT_RS04510 0.52 +0.4 1,043,002 - BPHYT_RS04510 0.76 +0.1 1,044,155 + +0.6
Or see this region's nucleotide sequence