Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02170 and BPHYT_RS02175 are separated by 41 nucleotides BPHYT_RS02175 and BPHYT_RS02180 are separated by 308 nucleotides
BPHYT_RS02170: BPHYT_RS02170 - type VI secretion protein, at 497,269 to 499,155
_RS02170
BPHYT_RS02175: BPHYT_RS02175 - type VI secretion protein ImpA, at 499,197 to 501,539
_RS02175
BPHYT_RS02180: BPHYT_RS02180 - hypothetical protein, at 501,848 to 502,372
_RS02180
Position (kb) 499
500
501
502 Strain fitness (log2 ratio) -1
0
1
2 at 498.584 kb on - strand, within BPHYT_RS02170 at 498.757 kb on + strand, within BPHYT_RS02170 at 498.757 kb on + strand, within BPHYT_RS02170 at 498.779 kb on - strand, within BPHYT_RS02170 at 498.847 kb on + strand, within BPHYT_RS02170 at 498.847 kb on + strand, within BPHYT_RS02170 at 498.848 kb on - strand, within BPHYT_RS02170 at 499.164 kb on - strand at 499.276 kb on + strand at 499.317 kb on + strand at 499.324 kb on - strand at 499.655 kb on - strand, within BPHYT_RS02175 at 499.865 kb on + strand, within BPHYT_RS02175 at 500.077 kb on - strand, within BPHYT_RS02175 at 500.091 kb on + strand, within BPHYT_RS02175 at 500.343 kb on - strand, within BPHYT_RS02175 at 500.371 kb on - strand, within BPHYT_RS02175 at 500.662 kb on - strand at 500.685 kb on + strand, within BPHYT_RS02175 at 500.686 kb on - strand, within BPHYT_RS02175 at 500.702 kb on + strand, within BPHYT_RS02175 at 500.703 kb on - strand, within BPHYT_RS02175 at 500.988 kb on - strand, within BPHYT_RS02175 at 501.572 kb on - strand at 501.667 kb on + strand at 501.667 kb on + strand at 501.746 kb on - strand at 502.019 kb on - strand, within BPHYT_RS02180 at 502.178 kb on + strand, within BPHYT_RS02180 at 502.261 kb on + strand, within BPHYT_RS02180 at 502.410 kb on - strand at 502.516 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 498,584 - BPHYT_RS02170 0.70 -0.4 498,757 + BPHYT_RS02170 0.79 +1.5 498,757 + BPHYT_RS02170 0.79 -0.5 498,779 - BPHYT_RS02170 0.80 +2.3 498,847 + BPHYT_RS02170 0.84 -0.3 498,847 + BPHYT_RS02170 0.84 +0.3 498,848 - BPHYT_RS02170 0.84 +2.3 499,164 - -1.1 499,276 + +0.5 499,317 + -0.8 499,324 - +1.0 499,655 - BPHYT_RS02175 0.20 -0.0 499,865 + BPHYT_RS02175 0.29 -0.3 500,077 - BPHYT_RS02175 0.38 -0.1 500,091 + BPHYT_RS02175 0.38 -0.4 500,343 - BPHYT_RS02175 0.49 -0.0 500,371 - BPHYT_RS02175 0.50 +0.2 500,662 - +1.2 500,685 + BPHYT_RS02175 0.64 +0.0 500,686 - BPHYT_RS02175 0.64 -0.2 500,702 + BPHYT_RS02175 0.64 -0.1 500,703 - BPHYT_RS02175 0.64 -0.1 500,988 - BPHYT_RS02175 0.76 -0.4 501,572 - -0.1 501,667 + +0.6 501,667 + +0.2 501,746 - -0.7 502,019 - BPHYT_RS02180 0.33 +0.2 502,178 + BPHYT_RS02180 0.63 -0.6 502,261 + BPHYT_RS02180 0.79 -0.7 502,410 - -0.3 502,516 + -0.8
Or see this region's nucleotide sequence