Experiment: B3 MOi 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27615 and BWI76_RS27620 are separated by 185 nucleotides BWI76_RS27620 and BWI76_RS27625 are separated by 112 nucleotides BWI76_RS27625 and BWI76_RS27630 are separated by 1 nucleotides BWI76_RS27630 and BWI76_RS27635 overlap by 4 nucleotides
BWI76_RS27615: BWI76_RS27615 - putative Shikimate kinase, at 5,731,743 to 5,732,348
_RS27615
BWI76_RS27620: BWI76_RS27620 - hypothetical protein, at 5,732,534 to 5,733,001
_RS27620
BWI76_RS27625: BWI76_RS27625 - NADPH:quinone reductase, at 5,733,114 to 5,734,121
_RS27625
BWI76_RS27630: BWI76_RS27630 - antibiotic biosynthesis monooxygenase, at 5,734,123 to 5,734,461
_RS27630
BWI76_RS27635: BWI76_RS27635 - AraC family transcriptional regulator, at 5,734,458 to 5,735,411
_RS27635
Position (kb)
5733
5734
5735 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 5732.153 kb on + strand, within BWI76_RS27615 at 5732.178 kb on - strand, within BWI76_RS27615 at 5732.280 kb on - strand, within BWI76_RS27615 at 5732.294 kb on + strand at 5732.348 kb on + strand at 5732.356 kb on - strand at 5732.356 kb on - strand at 5732.356 kb on - strand at 5732.356 kb on - strand at 5732.374 kb on + strand at 5732.432 kb on + strand at 5732.440 kb on - strand at 5732.460 kb on - strand at 5732.492 kb on - strand at 5732.568 kb on + strand at 5732.576 kb on - strand at 5732.576 kb on - strand at 5732.587 kb on + strand, within BWI76_RS27620 at 5732.624 kb on - strand, within BWI76_RS27620 at 5732.631 kb on + strand, within BWI76_RS27620 at 5732.639 kb on - strand, within BWI76_RS27620 at 5732.639 kb on - strand, within BWI76_RS27620 at 5732.925 kb on - strand, within BWI76_RS27620 at 5732.956 kb on - strand at 5733.066 kb on + strand at 5733.069 kb on - strand at 5733.070 kb on - strand at 5733.112 kb on + strand at 5733.389 kb on + strand, within BWI76_RS27625 at 5733.469 kb on - strand, within BWI76_RS27625 at 5733.532 kb on + strand, within BWI76_RS27625 at 5733.830 kb on + strand, within BWI76_RS27625 at 5733.870 kb on - strand, within BWI76_RS27625 at 5733.905 kb on - strand, within BWI76_RS27625 at 5733.924 kb on + strand, within BWI76_RS27625 at 5734.115 kb on + strand at 5734.123 kb on - strand at 5734.160 kb on + strand, within BWI76_RS27630 at 5734.163 kb on - strand, within BWI76_RS27630 at 5734.163 kb on - strand, within BWI76_RS27630 at 5734.163 kb on - strand, within BWI76_RS27630 at 5734.307 kb on + strand, within BWI76_RS27630 at 5734.436 kb on + strand at 5734.477 kb on + strand at 5734.498 kb on - strand at 5734.533 kb on + strand at 5734.567 kb on - strand, within BWI76_RS27635 at 5734.585 kb on + strand, within BWI76_RS27635 at 5735.074 kb on - strand, within BWI76_RS27635 at 5735.090 kb on + strand, within BWI76_RS27635
Per-strain Table
Position Strand Gene LocusTag Fraction B3 MOi 1 remove 5,732,153 + BWI76_RS27615 0.68 +1.6 5,732,178 - BWI76_RS27615 0.72 -0.3 5,732,280 - BWI76_RS27615 0.89 +0.2 5,732,294 + -1.5 5,732,348 + +0.7 5,732,356 - -1.5 5,732,356 - -0.5 5,732,356 - +1.6 5,732,356 - -0.1 5,732,374 + +0.1 5,732,432 + -0.4 5,732,440 - +0.1 5,732,460 - +0.4 5,732,492 - +0.3 5,732,568 + -0.1 5,732,576 - -1.7 5,732,576 - +0.7 5,732,587 + BWI76_RS27620 0.11 -1.2 5,732,624 - BWI76_RS27620 0.19 -0.6 5,732,631 + BWI76_RS27620 0.21 -0.4 5,732,639 - BWI76_RS27620 0.22 +0.4 5,732,639 - BWI76_RS27620 0.22 +0.7 5,732,925 - BWI76_RS27620 0.84 +1.8 5,732,956 - +0.6 5,733,066 + +0.8 5,733,069 - -0.5 5,733,070 - +0.1 5,733,112 + -0.4 5,733,389 + BWI76_RS27625 0.27 -0.4 5,733,469 - BWI76_RS27625 0.35 -0.3 5,733,532 + BWI76_RS27625 0.41 -0.9 5,733,830 + BWI76_RS27625 0.71 -1.1 5,733,870 - BWI76_RS27625 0.75 -0.4 5,733,905 - BWI76_RS27625 0.78 -1.1 5,733,924 + BWI76_RS27625 0.80 +0.2 5,734,115 + +0.7 5,734,123 - -0.8 5,734,160 + BWI76_RS27630 0.11 -1.6 5,734,163 - BWI76_RS27630 0.12 -0.3 5,734,163 - BWI76_RS27630 0.12 -0.2 5,734,163 - BWI76_RS27630 0.12 -0.3 5,734,307 + BWI76_RS27630 0.54 +2.4 5,734,436 + -0.1 5,734,477 + -0.0 5,734,498 - +1.9 5,734,533 + +0.2 5,734,567 - BWI76_RS27635 0.11 +0.2 5,734,585 + BWI76_RS27635 0.13 -0.5 5,735,074 - BWI76_RS27635 0.65 -1.8 5,735,090 + BWI76_RS27635 0.66 +3.5
Or see this region's nucleotide sequence