Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22450

Experiment: B3 MOi 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS22440 and BWI76_RS22445 are separated by 124 nucleotidesBWI76_RS22445 and BWI76_RS22450 are separated by 45 nucleotidesBWI76_RS22450 and BWI76_RS22455 are separated by 215 nucleotides BWI76_RS22440: BWI76_RS22440 - iron ABC transporter permease, at 4,678,733 to 4,679,587 _RS22440 BWI76_RS22445: BWI76_RS22445 - hypothetical protein, at 4,679,712 to 4,680,086 _RS22445 BWI76_RS22450: BWI76_RS22450 - selenoprotein W-related protein, at 4,680,132 to 4,680,416 _RS22450 BWI76_RS22455: BWI76_RS22455 - TonB-dependent receptor, at 4,680,632 to 4,683,001 _RS22455 Position (kb) 4680 4681Strain fitness (log2 ratio) -2 -1 0 1at 4679.211 kb on + strand, within BWI76_RS22440at 4679.272 kb on + strand, within BWI76_RS22440at 4679.366 kb on - strand, within BWI76_RS22440at 4679.425 kb on - strand, within BWI76_RS22440at 4679.489 kb on + strand, within BWI76_RS22440at 4679.642 kb on - strandat 4679.680 kb on - strandat 4680.060 kb on - strandat 4680.111 kb on - strandat 4680.206 kb on - strand, within BWI76_RS22450at 4680.382 kb on + strand, within BWI76_RS22450at 4680.572 kb on - strandat 4680.580 kb on - strandat 4680.580 kb on - strandat 4680.582 kb on - strandat 4680.582 kb on - strandat 4680.632 kb on + strandat 4680.642 kb on - strandat 4680.642 kb on - strandat 4680.725 kb on + strandat 4680.771 kb on + strandat 4680.881 kb on + strand, within BWI76_RS22455at 4681.226 kb on - strand, within BWI76_RS22455

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction B3 MOi 1
remove
4,679,211 + BWI76_RS22440 0.56 +1.3
4,679,272 + BWI76_RS22440 0.63 +0.9
4,679,366 - BWI76_RS22440 0.74 -0.5
4,679,425 - BWI76_RS22440 0.81 -0.2
4,679,489 + BWI76_RS22440 0.88 -0.0
4,679,642 - -0.3
4,679,680 - +1.2
4,680,060 - +0.3
4,680,111 - +0.1
4,680,206 - BWI76_RS22450 0.26 -0.4
4,680,382 + BWI76_RS22450 0.88 -1.8
4,680,572 - -0.2
4,680,580 - -2.1
4,680,580 - -0.2
4,680,582 - -0.2
4,680,582 - +1.2
4,680,632 + +1.4
4,680,642 - +0.6
4,680,642 - -1.1
4,680,725 + -0.1
4,680,771 + -0.1
4,680,881 + BWI76_RS22455 0.11 -0.2
4,681,226 - BWI76_RS22455 0.25 +1.4

Or see this region's nucleotide sequence