Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15410

Experiment: B3 MOi 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15405 and BWI76_RS15410 are separated by 139 nucleotidesBWI76_RS15410 and BWI76_RS15415 are separated by 386 nucleotides BWI76_RS15405: BWI76_RS15405 - diguanylate phosphodiesterase, at 3,226,983 to 3,228,200 _RS15405 BWI76_RS15410: BWI76_RS15410 - N-acetyltransferase, at 3,228,340 to 3,228,774 _RS15410 BWI76_RS15415: BWI76_RS15415 - LacI family transcriptional regulator, at 3,229,161 to 3,230,231 _RS15415 Position (kb) 3228 3229Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3227.378 kb on + strand, within BWI76_RS15405at 3227.383 kb on + strand, within BWI76_RS15405at 3227.383 kb on + strand, within BWI76_RS15405at 3227.388 kb on + strand, within BWI76_RS15405at 3227.441 kb on - strand, within BWI76_RS15405at 3227.531 kb on - strand, within BWI76_RS15405at 3227.576 kb on - strand, within BWI76_RS15405at 3227.599 kb on + strandat 3227.610 kb on - strand, within BWI76_RS15405at 3227.630 kb on - strand, within BWI76_RS15405at 3227.630 kb on - strand, within BWI76_RS15405at 3227.729 kb on + strandat 3227.855 kb on - strand, within BWI76_RS15405at 3227.899 kb on - strand, within BWI76_RS15405at 3227.976 kb on - strand, within BWI76_RS15405at 3227.978 kb on + strand, within BWI76_RS15405at 3227.991 kb on - strand, within BWI76_RS15405at 3228.039 kb on - strand, within BWI76_RS15405at 3228.039 kb on - strand, within BWI76_RS15405at 3228.158 kb on + strandat 3228.158 kb on + strandat 3228.186 kb on - strandat 3228.197 kb on + strandat 3228.197 kb on + strandat 3228.197 kb on + strandat 3228.205 kb on - strandat 3228.205 kb on - strandat 3228.234 kb on - strandat 3228.236 kb on + strandat 3228.280 kb on - strandat 3228.298 kb on - strandat 3228.314 kb on - strandat 3228.513 kb on + strand, within BWI76_RS15410at 3228.528 kb on - strand, within BWI76_RS15410at 3228.534 kb on - strand, within BWI76_RS15410at 3228.665 kb on + strand, within BWI76_RS15410at 3228.690 kb on + strand, within BWI76_RS15410at 3229.188 kb on - strandat 3229.188 kb on - strandat 3229.241 kb on - strandat 3229.300 kb on + strand, within BWI76_RS15415at 3229.379 kb on + strand, within BWI76_RS15415at 3229.429 kb on - strand, within BWI76_RS15415at 3229.594 kb on - strand, within BWI76_RS15415

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Per-strain Table

Position Strand Gene LocusTag Fraction B3 MOi 1
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3,227,378 + BWI76_RS15405 0.32 -0.9
3,227,383 + BWI76_RS15405 0.33 -0.9
3,227,383 + BWI76_RS15405 0.33 -2.8
3,227,388 + BWI76_RS15405 0.33 -0.8
3,227,441 - BWI76_RS15405 0.38 -1.0
3,227,531 - BWI76_RS15405 0.45 +0.5
3,227,576 - BWI76_RS15405 0.49 -2.8
3,227,599 + -0.8
3,227,610 - BWI76_RS15405 0.51 +0.1
3,227,630 - BWI76_RS15405 0.53 +0.0
3,227,630 - BWI76_RS15405 0.53 -1.9
3,227,729 + -0.8
3,227,855 - BWI76_RS15405 0.72 -0.8
3,227,899 - BWI76_RS15405 0.75 +0.6
3,227,976 - BWI76_RS15405 0.82 -0.1
3,227,978 + BWI76_RS15405 0.82 -1.3
3,227,991 - BWI76_RS15405 0.83 +0.2
3,228,039 - BWI76_RS15405 0.87 +0.2
3,228,039 - BWI76_RS15405 0.87 -0.0
3,228,158 + +0.3
3,228,158 + +0.6
3,228,186 - -1.1
3,228,197 + +0.6
3,228,197 + +1.1
3,228,197 + -0.6
3,228,205 - +0.7
3,228,205 - +1.1
3,228,234 - +0.0
3,228,236 + -1.4
3,228,280 - +0.9
3,228,298 - -0.1
3,228,314 - -0.3
3,228,513 + BWI76_RS15410 0.40 -0.8
3,228,528 - BWI76_RS15410 0.43 +1.8
3,228,534 - BWI76_RS15410 0.45 -0.4
3,228,665 + BWI76_RS15410 0.75 -0.7
3,228,690 + BWI76_RS15410 0.80 -0.7
3,229,188 - -0.5
3,229,188 - -0.8
3,229,241 - +0.5
3,229,300 + BWI76_RS15415 0.13 +2.3
3,229,379 + BWI76_RS15415 0.20 +0.6
3,229,429 - BWI76_RS15415 0.25 +1.3
3,229,594 - BWI76_RS15415 0.40 +0.4

Or see this region's nucleotide sequence