Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14935

Experiment: B3 MOi 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14930 and BWI76_RS14935 are separated by 288 nucleotidesBWI76_RS14935 and BWI76_RS14940 are separated by 139 nucleotides BWI76_RS14930: BWI76_RS14930 - hypothetical protein, at 3,129,388 to 3,130,197 _RS14930 BWI76_RS14935: BWI76_RS14935 - NIPSNAP family containing protein, at 3,130,486 to 3,130,815 _RS14935 BWI76_RS14940: BWI76_RS14940 - hypothetical protein, at 3,130,955 to 3,131,803 _RS14940 Position (kb) 3130 3131Strain fitness (log2 ratio) -1 0 1 2 3at 3129.607 kb on + strand, within BWI76_RS14930at 3130.446 kb on - strandat 3130.734 kb on - strand, within BWI76_RS14935at 3130.933 kb on + strandat 3131.271 kb on + strand, within BWI76_RS14940at 3131.348 kb on - strand, within BWI76_RS14940at 3131.580 kb on - strand, within BWI76_RS14940at 3131.586 kb on + strand, within BWI76_RS14940

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Per-strain Table

Position Strand Gene LocusTag Fraction B3 MOi 1
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3,129,607 + BWI76_RS14930 0.27 +0.3
3,130,446 - -0.3
3,130,734 - BWI76_RS14935 0.75 -1.5
3,130,933 + +3.0
3,131,271 + BWI76_RS14940 0.37 -0.0
3,131,348 - BWI76_RS14940 0.46 -1.0
3,131,580 - BWI76_RS14940 0.74 +0.2
3,131,586 + BWI76_RS14940 0.74 +1.8

Or see this region's nucleotide sequence