Experiment: B3 MOi 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13185 and BWI76_RS13190 overlap by 1 nucleotides BWI76_RS13190 and BWI76_RS13195 are separated by 177 nucleotides BWI76_RS13195 and BWI76_RS13200 overlap by 26 nucleotides BWI76_RS13200 and BWI76_RS13205 are separated by 202 nucleotides
BWI76_RS13185: BWI76_RS13185 - MFS transporter, at 2,751,487 to 2,753,139
_RS13185
BWI76_RS13190: BWI76_RS13190 - MarR family transcriptional regulator, at 2,753,139 to 2,753,570
_RS13190
BWI76_RS13195: BWI76_RS13195 - glutamate dehydrogenase, at 2,753,748 to 2,755,022
_RS13195
BWI76_RS13200: BWI76_RS13200 - hypothetical protein, at 2,754,997 to 2,755,230
_RS13200
BWI76_RS13205: BWI76_RS13205 - hypothetical protein, at 2,755,433 to 2,756,224
_RS13205
Position (kb)
2753
2754
2755
2756 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2753.635 kb on - strand at 2753.659 kb on - strand at 2753.974 kb on + strand, within BWI76_RS13195 at 2754.215 kb on - strand, within BWI76_RS13195 at 2754.261 kb on - strand, within BWI76_RS13195 at 2755.074 kb on + strand, within BWI76_RS13200 at 2755.074 kb on + strand, within BWI76_RS13200 at 2755.074 kb on + strand, within BWI76_RS13200 at 2755.074 kb on + strand, within BWI76_RS13200 at 2755.074 kb on + strand, within BWI76_RS13200 at 2755.074 kb on + strand, within BWI76_RS13200 at 2755.074 kb on + strand, within BWI76_RS13200 at 2755.075 kb on + strand, within BWI76_RS13200 at 2755.082 kb on - strand, within BWI76_RS13200 at 2755.082 kb on - strand, within BWI76_RS13200 at 2755.407 kb on + strand at 2755.662 kb on + strand, within BWI76_RS13205 at 2755.757 kb on + strand, within BWI76_RS13205 at 2755.899 kb on - strand, within BWI76_RS13205 at 2755.915 kb on - strand, within BWI76_RS13205 at 2755.951 kb on + strand, within BWI76_RS13205
Per-strain Table
Position Strand Gene LocusTag Fraction B3 MOi 1 remove 2,753,635 - +1.3 2,753,659 - -0.6 2,753,974 + BWI76_RS13195 0.18 -0.7 2,754,215 - BWI76_RS13195 0.37 -1.9 2,754,261 - BWI76_RS13195 0.40 -0.1 2,755,074 + BWI76_RS13200 0.33 +0.2 2,755,074 + BWI76_RS13200 0.33 +0.3 2,755,074 + BWI76_RS13200 0.33 -0.3 2,755,074 + BWI76_RS13200 0.33 +0.1 2,755,074 + BWI76_RS13200 0.33 +0.4 2,755,074 + BWI76_RS13200 0.33 -1.2 2,755,074 + BWI76_RS13200 0.33 +0.7 2,755,075 + BWI76_RS13200 0.33 -1.7 2,755,082 - BWI76_RS13200 0.36 +1.9 2,755,082 - BWI76_RS13200 0.36 +0.4 2,755,407 + +1.2 2,755,662 + BWI76_RS13205 0.29 +1.2 2,755,757 + BWI76_RS13205 0.41 -0.1 2,755,899 - BWI76_RS13205 0.59 +0.2 2,755,915 - BWI76_RS13205 0.61 +0.4 2,755,951 + BWI76_RS13205 0.65 +0.2
Or see this region's nucleotide sequence