Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11815

Experiment: B3 MOi 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11810 and BWI76_RS11815 are separated by 97 nucleotidesBWI76_RS11815 and BWI76_RS11820 are separated by 214 nucleotides BWI76_RS11810: BWI76_RS11810 - outer membrane protein OmpW, at 2,484,371 to 2,485,009 _RS11810 BWI76_RS11815: BWI76_RS11815 - hypothetical protein, at 2,485,107 to 2,485,352 _RS11815 BWI76_RS11820: BWI76_RS11820 - short-chain dehydrogenase/reductase SDR, at 2,485,567 to 2,486,271 _RS11820 Position (kb) 2485 2486Strain fitness (log2 ratio) -1 0 1at 2484.120 kb on + strandat 2484.126 kb on - strandat 2484.197 kb on + strandat 2484.323 kb on + strandat 2484.521 kb on - strand, within BWI76_RS11810at 2484.588 kb on + strand, within BWI76_RS11810at 2484.801 kb on + strand, within BWI76_RS11810at 2485.030 kb on + strandat 2485.279 kb on + strand, within BWI76_RS11815at 2485.498 kb on - strandat 2486.168 kb on + strand, within BWI76_RS11820at 2486.215 kb on - strandat 2486.317 kb on + strandat 2486.328 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction B3 MOi 1
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2,484,120 + +0.1
2,484,126 - +0.7
2,484,197 + -0.8
2,484,323 + +0.1
2,484,521 - BWI76_RS11810 0.23 +0.9
2,484,588 + BWI76_RS11810 0.34 -1.3
2,484,801 + BWI76_RS11810 0.67 -0.3
2,485,030 + -0.8
2,485,279 + BWI76_RS11815 0.70 -1.2
2,485,498 - +0.4
2,486,168 + BWI76_RS11820 0.85 +0.7
2,486,215 - -0.3
2,486,317 + +0.3
2,486,328 + -0.0

Or see this region's nucleotide sequence