Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05885

Experiment: B3 MOi 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05875 and BWI76_RS05880 are separated by 7 nucleotidesBWI76_RS05880 and BWI76_RS05885 are separated by 100 nucleotidesBWI76_RS05885 and BWI76_RS05890 are separated by 214 nucleotides BWI76_RS05875: BWI76_RS05875 - hypothetical protein, at 1,234,394 to 1,236,181 _RS05875 BWI76_RS05880: BWI76_RS05880 - AraC-type DNA-binding domain-containing protein, at 1,236,189 to 1,236,986 _RS05880 BWI76_RS05885: BWI76_RS05885 - anion permease, at 1,237,087 to 1,237,896 _RS05885 BWI76_RS05890: BWI76_RS05890 - haloacid dehalogenase, at 1,238,111 to 1,238,773 _RS05890 Position (kb) 1237 1238Strain fitness (log2 ratio) -1 0 1 2at 1236.204 kb on - strandat 1236.252 kb on + strandat 1236.300 kb on + strand, within BWI76_RS05880at 1236.430 kb on - strand, within BWI76_RS05880at 1236.989 kb on + strandat 1236.989 kb on + strandat 1236.989 kb on + strandat 1237.174 kb on - strand, within BWI76_RS05885at 1237.282 kb on - strand, within BWI76_RS05885at 1237.538 kb on + strand, within BWI76_RS05885at 1237.680 kb on + strand, within BWI76_RS05885at 1237.883 kb on - strandat 1238.123 kb on - strandat 1238.192 kb on - strand, within BWI76_RS05890at 1238.192 kb on - strand, within BWI76_RS05890at 1238.192 kb on - strand, within BWI76_RS05890at 1238.311 kb on + strand, within BWI76_RS05890at 1238.511 kb on + strand, within BWI76_RS05890at 1238.568 kb on + strand, within BWI76_RS05890at 1238.592 kb on + strand, within BWI76_RS05890at 1238.706 kb on + strand, within BWI76_RS05890at 1238.843 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction B3 MOi 1
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1,236,204 - -0.1
1,236,252 + +0.8
1,236,300 + BWI76_RS05880 0.14 +1.6
1,236,430 - BWI76_RS05880 0.30 +0.2
1,236,989 + -0.2
1,236,989 + +0.6
1,236,989 + +0.1
1,237,174 - BWI76_RS05885 0.11 +0.1
1,237,282 - BWI76_RS05885 0.24 -1.5
1,237,538 + BWI76_RS05885 0.56 -1.5
1,237,680 + BWI76_RS05885 0.73 -1.0
1,237,883 - -0.5
1,238,123 - -0.9
1,238,192 - BWI76_RS05890 0.12 -0.9
1,238,192 - BWI76_RS05890 0.12 +0.2
1,238,192 - BWI76_RS05890 0.12 +0.8
1,238,311 + BWI76_RS05890 0.30 +0.2
1,238,511 + BWI76_RS05890 0.60 +0.7
1,238,568 + BWI76_RS05890 0.69 +2.6
1,238,592 + BWI76_RS05890 0.73 -0.5
1,238,706 + BWI76_RS05890 0.90 -0.0
1,238,843 - +0.9

Or see this region's nucleotide sequence