Experiment: B3 MOi 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03535 and BWI76_RS03540 are separated by 123 nucleotides BWI76_RS03540 and BWI76_RS03545 are separated by 241 nucleotides BWI76_RS03545 and BWI76_RS03550 are separated by 17 nucleotides BWI76_RS03550 and BWI76_RS03555 are separated by 3 nucleotides BWI76_RS03555 and BWI76_RS03560 are separated by 12 nucleotides
BWI76_RS03535: BWI76_RS03535 - Tryptophanase (EC 4.1.99.1) <small>(from data)</small>, at 734,065 to 735,453
_RS03535
BWI76_RS03540: BWI76_RS03540 - tryptophanase leader peptide, at 735,577 to 735,672
_RS03540
BWI76_RS03545: BWI76_RS03545 - QacE family quaternary ammonium compound efflux SMR transporter, at 735,914 to 736,243
_RS03545
BWI76_RS03550: BWI76_RS03550 - QacE family quaternary ammonium compound efflux SMR transporter, at 736,261 to 736,680
_RS03550
BWI76_RS03555: BWI76_RS03555 - hypothetical protein, at 736,684 to 737,385
_RS03555
BWI76_RS03560: BWI76_RS03560 - propanediol utilization phosphotransacylase, at 737,398 to 738,018
_RS03560
Position (kb) 736
737 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 735.266 kb on - strand, within BWI76_RS03535 at 735.284 kb on - strand, within BWI76_RS03535 at 735.294 kb on - strand, within BWI76_RS03535 at 735.299 kb on - strand, within BWI76_RS03535 at 735.299 kb on - strand, within BWI76_RS03535 at 735.315 kb on + strand at 735.320 kb on + strand at 735.320 kb on + strand at 735.327 kb on - strand at 735.362 kb on + strand at 735.362 kb on + strand at 735.366 kb on + strand at 735.374 kb on + strand at 735.375 kb on - strand at 735.387 kb on + strand at 735.387 kb on + strand at 735.387 kb on + strand at 735.387 kb on + strand at 735.387 kb on + strand at 735.387 kb on + strand at 735.387 kb on + strand at 735.387 kb on + strand at 735.387 kb on + strand at 735.387 kb on + strand at 735.387 kb on + strand at 735.387 kb on + strand at 735.387 kb on + strand at 735.387 kb on + strand at 735.387 kb on + strand at 735.387 kb on + strand at 735.387 kb on + strand at 735.387 kb on + strand at 735.387 kb on + strand at 735.395 kb on - strand at 735.395 kb on - strand at 735.395 kb on - strand at 735.395 kb on - strand at 735.395 kb on - strand at 735.395 kb on - strand at 735.395 kb on - strand at 735.395 kb on - strand at 735.395 kb on - strand at 735.409 kb on + strand at 735.433 kb on + strand at 735.435 kb on + strand at 735.435 kb on + strand at 735.435 kb on + strand at 735.435 kb on + strand at 735.435 kb on + strand at 735.435 kb on + strand at 735.443 kb on - strand at 735.443 kb on - strand at 735.443 kb on - strand at 735.443 kb on - strand at 735.443 kb on - strand at 735.443 kb on - strand at 735.468 kb on + strand at 735.481 kb on + strand at 735.596 kb on - strand, within BWI76_RS03540 at 735.611 kb on + strand, within BWI76_RS03540 at 735.612 kb on + strand, within BWI76_RS03540 at 735.614 kb on - strand, within BWI76_RS03540 at 735.634 kb on + strand, within BWI76_RS03540 at 735.634 kb on + strand, within BWI76_RS03540 at 735.634 kb on + strand, within BWI76_RS03540 at 735.634 kb on + strand, within BWI76_RS03540 at 735.639 kb on + strand, within BWI76_RS03540 at 735.642 kb on - strand, within BWI76_RS03540 at 735.674 kb on + strand at 735.682 kb on - strand at 735.688 kb on + strand at 735.697 kb on - strand at 735.770 kb on + strand at 735.803 kb on + strand at 735.806 kb on + strand at 735.827 kb on - strand at 735.880 kb on + strand at 735.912 kb on + strand at 735.912 kb on + strand at 735.913 kb on + strand at 735.914 kb on - strand at 735.920 kb on - strand at 735.964 kb on - strand, within BWI76_RS03545 at 735.964 kb on - strand, within BWI76_RS03545 at 735.974 kb on - strand, within BWI76_RS03545 at 736.036 kb on + strand, within BWI76_RS03545 at 736.038 kb on + strand, within BWI76_RS03545 at 736.075 kb on + strand, within BWI76_RS03545 at 736.075 kb on + strand, within BWI76_RS03545 at 736.094 kb on + strand, within BWI76_RS03545 at 736.102 kb on - strand, within BWI76_RS03545 at 736.104 kb on + strand, within BWI76_RS03545 at 736.112 kb on - strand, within BWI76_RS03545 at 736.149 kb on + strand, within BWI76_RS03545 at 736.457 kb on - strand, within BWI76_RS03550 at 736.478 kb on + strand, within BWI76_RS03550 at 736.478 kb on + strand, within BWI76_RS03550 at 736.478 kb on + strand, within BWI76_RS03550 at 736.491 kb on - strand, within BWI76_RS03550 at 736.491 kb on - strand, within BWI76_RS03550 at 736.509 kb on - strand, within BWI76_RS03550 at 736.548 kb on - strand, within BWI76_RS03550 at 736.608 kb on + strand, within BWI76_RS03550 at 736.769 kb on + strand, within BWI76_RS03555 at 736.822 kb on - strand, within BWI76_RS03555 at 736.958 kb on + strand, within BWI76_RS03555 at 736.958 kb on + strand, within BWI76_RS03555 at 737.080 kb on - strand, within BWI76_RS03555 at 737.148 kb on + strand, within BWI76_RS03555 at 737.150 kb on + strand, within BWI76_RS03555 at 737.150 kb on + strand, within BWI76_RS03555 at 737.244 kb on + strand, within BWI76_RS03555 at 737.325 kb on - strand at 737.408 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction B3 MOi 1 remove 735,266 - BWI76_RS03535 0.86 +0.2 735,284 - BWI76_RS03535 0.88 -1.1 735,294 - BWI76_RS03535 0.88 +0.5 735,299 - BWI76_RS03535 0.89 -0.3 735,299 - BWI76_RS03535 0.89 +0.5 735,315 + +1.1 735,320 + -0.0 735,320 + -0.6 735,327 - -0.0 735,362 + -0.1 735,362 + -0.4 735,366 + -0.2 735,374 + -0.7 735,375 - -0.9 735,387 + +1.1 735,387 + +0.7 735,387 + +0.1 735,387 + -0.3 735,387 + +0.4 735,387 + -2.5 735,387 + -0.9 735,387 + +0.2 735,387 + -2.0 735,387 + +1.1 735,387 + -2.4 735,387 + +1.1 735,387 + -0.5 735,387 + -0.2 735,387 + +0.4 735,387 + -0.8 735,387 + +0.9 735,387 + -0.8 735,387 + -0.9 735,395 - +0.5 735,395 - -0.4 735,395 - +0.3 735,395 - -0.7 735,395 - +0.2 735,395 - +1.5 735,395 - -1.6 735,395 - -0.1 735,395 - -0.5 735,409 + +0.9 735,433 + +0.3 735,435 + +0.4 735,435 + +0.7 735,435 + +0.3 735,435 + -1.7 735,435 + +0.3 735,435 + +0.4 735,443 - +2.0 735,443 - +0.0 735,443 - +1.1 735,443 - -1.2 735,443 - -2.0 735,443 - +0.7 735,468 + -0.8 735,481 + -0.4 735,596 - BWI76_RS03540 0.20 +0.4 735,611 + BWI76_RS03540 0.35 +1.7 735,612 + BWI76_RS03540 0.36 +3.4 735,614 - BWI76_RS03540 0.39 -0.5 735,634 + BWI76_RS03540 0.59 -0.2 735,634 + BWI76_RS03540 0.59 -0.9 735,634 + BWI76_RS03540 0.59 +0.3 735,634 + BWI76_RS03540 0.59 +0.0 735,639 + BWI76_RS03540 0.65 +1.0 735,642 - BWI76_RS03540 0.68 +1.0 735,674 + +0.2 735,682 - +0.4 735,688 + +1.1 735,697 - -0.8 735,770 + -0.8 735,803 + -1.2 735,806 + -0.1 735,827 - -0.3 735,880 + +0.5 735,912 + -0.4 735,912 + -0.2 735,913 + -0.2 735,914 - +0.3 735,920 - -0.7 735,964 - BWI76_RS03545 0.15 -0.6 735,964 - BWI76_RS03545 0.15 -0.0 735,974 - BWI76_RS03545 0.18 +1.6 736,036 + BWI76_RS03545 0.37 +1.3 736,038 + BWI76_RS03545 0.38 -0.2 736,075 + BWI76_RS03545 0.49 -1.1 736,075 + BWI76_RS03545 0.49 -1.6 736,094 + BWI76_RS03545 0.55 +1.0 736,102 - BWI76_RS03545 0.57 +1.4 736,104 + BWI76_RS03545 0.58 +0.7 736,112 - BWI76_RS03545 0.60 +0.4 736,149 + BWI76_RS03545 0.71 +0.5 736,457 - BWI76_RS03550 0.47 -0.2 736,478 + BWI76_RS03550 0.52 +0.3 736,478 + BWI76_RS03550 0.52 -0.4 736,478 + BWI76_RS03550 0.52 -0.5 736,491 - BWI76_RS03550 0.55 +0.7 736,491 - BWI76_RS03550 0.55 -0.3 736,509 - BWI76_RS03550 0.59 -0.4 736,548 - BWI76_RS03550 0.68 +0.1 736,608 + BWI76_RS03550 0.83 -0.7 736,769 + BWI76_RS03555 0.12 +0.4 736,822 - BWI76_RS03555 0.20 -1.9 736,958 + BWI76_RS03555 0.39 -0.2 736,958 + BWI76_RS03555 0.39 +0.9 737,080 - BWI76_RS03555 0.56 +0.3 737,148 + BWI76_RS03555 0.66 -0.3 737,150 + BWI76_RS03555 0.66 +1.0 737,150 + BWI76_RS03555 0.66 -0.8 737,244 + BWI76_RS03555 0.80 -0.5 737,325 - -0.5 737,408 + +0.7
Or see this region's nucleotide sequence