Experiment: Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0791 and BT0792 are separated by 88 nucleotides BT0792 and BT0793 are separated by 12 nucleotides
BT0791: BT0791 - conserved hypothetical protein (NCBI ptt file), at 980,672 to 981,403
BT0791
BT0792: BT0792 - xylulokinase (EC 2.7.1.17) <small>(from data)</small>, at 981,492 to 982,985
BT0792
BT0793: BT0793 - xylose isomerase (NCBI ptt file), at 982,998 to 984,314
BT0793
Position (kb) 981
982
983 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 980.773 kb on - strand, within BT0791 at 980.805 kb on - strand, within BT0791 at 980.837 kb on + strand, within BT0791 at 980.837 kb on + strand, within BT0791 at 980.838 kb on - strand, within BT0791 at 980.875 kb on - strand, within BT0791 at 980.875 kb on - strand, within BT0791 at 980.984 kb on - strand, within BT0791 at 981.153 kb on - strand, within BT0791 at 981.184 kb on + strand, within BT0791 at 981.185 kb on - strand, within BT0791 at 981.251 kb on + strand, within BT0791 at 981.306 kb on - strand, within BT0791 at 981.309 kb on + strand, within BT0791 at 981.310 kb on - strand, within BT0791 at 981.388 kb on + strand at 981.405 kb on - strand at 981.409 kb on - strand at 981.411 kb on + strand at 981.419 kb on - strand at 981.422 kb on + strand at 981.729 kb on - strand, within BT0792 at 981.760 kb on + strand, within BT0792 at 981.794 kb on + strand, within BT0792 at 981.956 kb on + strand, within BT0792 at 982.271 kb on + strand, within BT0792 at 982.272 kb on - strand, within BT0792 at 982.297 kb on - strand, within BT0792 at 982.458 kb on - strand, within BT0792 at 982.514 kb on + strand, within BT0792 at 982.623 kb on - strand, within BT0792 at 982.728 kb on - strand, within BT0792 at 982.849 kb on - strand at 982.884 kb on - strand at 982.910 kb on - strand at 982.955 kb on + strand at 982.961 kb on - strand at 983.082 kb on + strand at 983.293 kb on - strand, within BT0793 at 983.338 kb on + strand, within BT0793 at 983.372 kb on - strand, within BT0793 at 983.377 kb on - strand, within BT0793 at 983.452 kb on - strand, within BT0793 at 983.586 kb on - strand, within BT0793 at 983.863 kb on + strand, within BT0793 at 983.966 kb on + strand, within BT0793
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen remove 980,773 - BT0791 0.14 -0.6 980,805 - BT0791 0.18 +0.0 980,837 + BT0791 0.23 +0.6 980,837 + BT0791 0.23 -0.1 980,838 - BT0791 0.23 -0.9 980,875 - BT0791 0.28 -0.5 980,875 - BT0791 0.28 +1.0 980,984 - BT0791 0.43 -0.8 981,153 - BT0791 0.66 -1.0 981,184 + BT0791 0.70 -2.0 981,185 - BT0791 0.70 +2.6 981,251 + BT0791 0.79 +0.0 981,306 - BT0791 0.87 -0.6 981,309 + BT0791 0.87 +0.0 981,310 - BT0791 0.87 -1.0 981,388 + -1.4 981,405 - -1.4 981,409 - -0.6 981,411 + +0.2 981,419 - -2.0 981,422 + -1.5 981,729 - BT0792 0.16 -3.1 981,760 + BT0792 0.18 +2.2 981,794 + BT0792 0.20 +1.0 981,956 + BT0792 0.31 -1.0 982,271 + BT0792 0.52 +1.0 982,272 - BT0792 0.52 +1.0 982,297 - BT0792 0.54 +0.6 982,458 - BT0792 0.65 +1.6 982,514 + BT0792 0.68 +0.0 982,623 - BT0792 0.76 -0.1 982,728 - BT0792 0.83 -1.8 982,849 - +0.0 982,884 - +2.0 982,910 - +0.3 982,955 + -1.0 982,961 - -1.8 983,082 + -1.3 983,293 - BT0793 0.22 +2.0 983,338 + BT0793 0.26 -1.3 983,372 - BT0793 0.28 +0.4 983,377 - BT0793 0.29 -1.3 983,452 - BT0793 0.34 -1.2 983,586 - BT0793 0.45 -0.6 983,863 + BT0793 0.66 -1.0 983,966 + BT0793 0.74 -0.8
Or see this region's nucleotide sequence