Experiment: KLEB24 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17655 and BWI76_RS17660 are separated by 94 nucleotides BWI76_RS17660 and BWI76_RS17665 overlap by 16 nucleotides BWI76_RS17665 and BWI76_RS17670 are separated by 18 nucleotides BWI76_RS17670 and BWI76_RS17675 overlap by 4 nucleotides
BWI76_RS17655: BWI76_RS17655 - MFS transporter, at 3,667,503 to 3,668,642
_RS17655
BWI76_RS17660: BWI76_RS17660 - AraC/XylS familytranscription regulator, at 3,668,737 to 3,669,504
_RS17660
BWI76_RS17665: BWI76_RS17665 - proteasome-type protease, at 3,669,489 to 3,670,241
_RS17665
BWI76_RS17670: BWI76_RS17670 - transglutaminase, at 3,670,260 to 3,671,075
_RS17670
BWI76_RS17675: BWI76_RS17675 - hypothetical protein, at 3,671,072 to 3,672,001
_RS17675
Position (kb)
3669
3670
3671 Strain fitness (log2 ratio)
-2
-1
0
1 at 3668.671 kb on + strand at 3668.946 kb on - strand at 3669.018 kb on + strand, within BWI76_RS17660 at 3669.057 kb on - strand, within BWI76_RS17660 at 3669.751 kb on + strand, within BWI76_RS17665 at 3669.899 kb on - strand, within BWI76_RS17665 at 3670.295 kb on + strand at 3670.295 kb on + strand at 3670.366 kb on - strand, within BWI76_RS17670 at 3670.908 kb on + strand, within BWI76_RS17670 at 3670.950 kb on + strand, within BWI76_RS17670 at 3671.105 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB24 MOI 1 remove 3,668,671 + -0.5 3,668,946 - -1.1 3,669,018 + BWI76_RS17660 0.37 -0.1 3,669,057 - BWI76_RS17660 0.42 +0.2 3,669,751 + BWI76_RS17665 0.35 -1.8 3,669,899 - BWI76_RS17665 0.54 -0.6 3,670,295 + +0.5 3,670,295 + -0.6 3,670,366 - BWI76_RS17670 0.13 -0.1 3,670,908 + BWI76_RS17670 0.79 -0.3 3,670,950 + BWI76_RS17670 0.85 -0.3 3,671,105 + -0.8
Or see this region's nucleotide sequence