Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16720

Experiment: KLEB24 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16715 and BWI76_RS16720 are separated by 725 nucleotidesBWI76_RS16720 and BWI76_RS16725 are separated by 92 nucleotides BWI76_RS16715: BWI76_RS16715 - hypothetical protein, at 3,460,760 to 3,461,668 _RS16715 BWI76_RS16720: BWI76_RS16720 - hypothetical protein, at 3,462,394 to 3,463,731 _RS16720 BWI76_RS16725: BWI76_RS16725 - Na+/H+ antiporter NhaC-like protein, at 3,463,824 to 3,465,242 _RS16725 Position (kb) 3462 3463 3464Strain fitness (log2 ratio) -2 -1 0 1 2at 3461.398 kb on - strand, within BWI76_RS16715at 3461.398 kb on - strand, within BWI76_RS16715at 3461.442 kb on + strand, within BWI76_RS16715at 3461.482 kb on - strand, within BWI76_RS16715at 3461.497 kb on - strand, within BWI76_RS16715at 3461.512 kb on - strand, within BWI76_RS16715at 3461.562 kb on - strand, within BWI76_RS16715at 3461.604 kb on - strandat 3461.655 kb on - strandat 3461.655 kb on - strandat 3461.673 kb on - strandat 3461.738 kb on - strandat 3461.868 kb on - strandat 3461.883 kb on + strandat 3461.883 kb on + strandat 3461.883 kb on + strandat 3461.883 kb on + strandat 3461.918 kb on - strandat 3461.923 kb on - strandat 3461.930 kb on + strandat 3462.033 kb on + strandat 3462.083 kb on + strandat 3462.306 kb on - strandat 3462.322 kb on + strandat 3462.498 kb on + strandat 3462.621 kb on + strand, within BWI76_RS16720at 3462.629 kb on - strand, within BWI76_RS16720at 3462.681 kb on + strand, within BWI76_RS16720at 3462.731 kb on - strand, within BWI76_RS16720at 3463.089 kb on - strand, within BWI76_RS16720at 3463.421 kb on + strand, within BWI76_RS16720at 3463.659 kb on - strandat 3463.726 kb on + strandat 3463.769 kb on - strandat 3463.877 kb on + strandat 3464.053 kb on - strand, within BWI76_RS16725at 3464.184 kb on - strand, within BWI76_RS16725at 3464.201 kb on - strand, within BWI76_RS16725at 3464.274 kb on + strand, within BWI76_RS16725at 3464.282 kb on + strand, within BWI76_RS16725at 3464.365 kb on - strand, within BWI76_RS16725at 3464.372 kb on + strand, within BWI76_RS16725at 3464.397 kb on - strand, within BWI76_RS16725at 3464.399 kb on + strand, within BWI76_RS16725at 3464.440 kb on - strand, within BWI76_RS16725at 3464.472 kb on - strand, within BWI76_RS16725at 3464.526 kb on - strand, within BWI76_RS16725at 3464.528 kb on - strand, within BWI76_RS16725at 3464.700 kb on - strand, within BWI76_RS16725

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB24 MOI 1
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3,461,398 - BWI76_RS16715 0.70 -0.8
3,461,398 - BWI76_RS16715 0.70 -1.7
3,461,442 + BWI76_RS16715 0.75 +0.1
3,461,482 - BWI76_RS16715 0.79 +0.5
3,461,497 - BWI76_RS16715 0.81 +0.6
3,461,512 - BWI76_RS16715 0.83 -0.1
3,461,562 - BWI76_RS16715 0.88 +0.6
3,461,604 - -0.2
3,461,655 - +0.6
3,461,655 - -0.0
3,461,673 - -0.7
3,461,738 - +0.2
3,461,868 - -1.4
3,461,883 + -0.1
3,461,883 + +0.8
3,461,883 + -1.0
3,461,883 + +0.7
3,461,918 - -0.2
3,461,923 - -2.5
3,461,930 + -1.6
3,462,033 + -0.1
3,462,083 + -0.5
3,462,306 - -0.1
3,462,322 + -0.2
3,462,498 + +0.4
3,462,621 + BWI76_RS16720 0.17 -2.4
3,462,629 - BWI76_RS16720 0.18 -0.2
3,462,681 + BWI76_RS16720 0.21 -1.4
3,462,731 - BWI76_RS16720 0.25 -1.5
3,463,089 - BWI76_RS16720 0.52 +0.2
3,463,421 + BWI76_RS16720 0.77 -0.1
3,463,659 - -0.3
3,463,726 + +0.4
3,463,769 - -0.3
3,463,877 + +2.1
3,464,053 - BWI76_RS16725 0.16 +0.1
3,464,184 - BWI76_RS16725 0.25 +0.6
3,464,201 - BWI76_RS16725 0.27 -0.8
3,464,274 + BWI76_RS16725 0.32 -0.0
3,464,282 + BWI76_RS16725 0.32 -0.5
3,464,365 - BWI76_RS16725 0.38 +1.4
3,464,372 + BWI76_RS16725 0.39 -0.2
3,464,397 - BWI76_RS16725 0.40 -0.8
3,464,399 + BWI76_RS16725 0.41 +0.4
3,464,440 - BWI76_RS16725 0.43 +1.8
3,464,472 - BWI76_RS16725 0.46 -0.4
3,464,526 - BWI76_RS16725 0.49 +0.1
3,464,528 - BWI76_RS16725 0.50 -1.0
3,464,700 - BWI76_RS16725 0.62 +1.3

Or see this region's nucleotide sequence