Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10485

Experiment: KLEB24 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10480 and BWI76_RS10485 are separated by 10 nucleotidesBWI76_RS10485 and BWI76_RS10490 are separated by 13 nucleotides BWI76_RS10480: BWI76_RS10480 - amino acid ABC transporter substrate-binding protein, at 2,214,370 to 2,215,398 _RS10480 BWI76_RS10485: BWI76_RS10485 - (hypo)xanthine hydroxylase reductase, at 2,215,409 to 2,216,377 _RS10485 BWI76_RS10490: BWI76_RS10490 - vanillate O-demethylase oxygenase subunit, at 2,216,391 to 2,217,428 _RS10490 Position (kb) 2215 2216 2217Strain fitness (log2 ratio) -2 -1 0 1 2at 2214.616 kb on + strand, within BWI76_RS10480at 2214.725 kb on + strand, within BWI76_RS10480at 2214.753 kb on + strand, within BWI76_RS10480at 2214.787 kb on - strand, within BWI76_RS10480at 2214.854 kb on - strand, within BWI76_RS10480at 2214.915 kb on + strand, within BWI76_RS10480at 2214.923 kb on - strand, within BWI76_RS10480at 2214.941 kb on + strand, within BWI76_RS10480at 2214.978 kb on + strand, within BWI76_RS10480at 2215.011 kb on + strand, within BWI76_RS10480at 2215.029 kb on + strand, within BWI76_RS10480at 2215.037 kb on - strand, within BWI76_RS10480at 2215.037 kb on - strandat 2215.197 kb on + strand, within BWI76_RS10480at 2215.358 kb on + strandat 2215.464 kb on - strandat 2215.566 kb on + strand, within BWI76_RS10485at 2215.611 kb on - strand, within BWI76_RS10485at 2216.066 kb on + strand, within BWI76_RS10485at 2216.201 kb on + strand, within BWI76_RS10485at 2216.552 kb on + strand, within BWI76_RS10490at 2216.552 kb on + strand, within BWI76_RS10490at 2216.560 kb on - strand, within BWI76_RS10490at 2216.841 kb on - strand, within BWI76_RS10490at 2216.881 kb on + strand, within BWI76_RS10490at 2217.254 kb on + strand, within BWI76_RS10490

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB24 MOI 1
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2,214,616 + BWI76_RS10480 0.24 -2.3
2,214,725 + BWI76_RS10480 0.34 +2.6
2,214,753 + BWI76_RS10480 0.37 -0.9
2,214,787 - BWI76_RS10480 0.41 -0.2
2,214,854 - BWI76_RS10480 0.47 +2.3
2,214,915 + BWI76_RS10480 0.53 +0.2
2,214,923 - BWI76_RS10480 0.54 -0.4
2,214,941 + BWI76_RS10480 0.55 -0.4
2,214,978 + BWI76_RS10480 0.59 +0.6
2,215,011 + BWI76_RS10480 0.62 +0.1
2,215,029 + BWI76_RS10480 0.64 +0.2
2,215,037 - BWI76_RS10480 0.65 -0.5
2,215,037 - -1.3
2,215,197 + BWI76_RS10480 0.80 -0.6
2,215,358 + -0.7
2,215,464 - -0.1
2,215,566 + BWI76_RS10485 0.16 -0.5
2,215,611 - BWI76_RS10485 0.21 -1.5
2,216,066 + BWI76_RS10485 0.68 -1.1
2,216,201 + BWI76_RS10485 0.82 +0.5
2,216,552 + BWI76_RS10490 0.16 -0.5
2,216,552 + BWI76_RS10490 0.16 -0.8
2,216,560 - BWI76_RS10490 0.16 -1.4
2,216,841 - BWI76_RS10490 0.43 -0.1
2,216,881 + BWI76_RS10490 0.47 -0.7
2,217,254 + BWI76_RS10490 0.83 -0.2

Or see this region's nucleotide sequence