Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06130

Experiment: KLEB24 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06125 and BWI76_RS06130 are separated by 101 nucleotidesBWI76_RS06130 and BWI76_RS06135 are separated by 169 nucleotides BWI76_RS06125: BWI76_RS06125 - D-alanine--D-alanine ligase A, at 1,286,865 to 1,287,962 _RS06125 BWI76_RS06130: BWI76_RS06130 - extensin family protein, at 1,288,064 to 1,288,747 _RS06130 BWI76_RS06135: BWI76_RS06135 - MFS transporter, at 1,288,917 to 1,290,116 _RS06135 Position (kb) 1288 1289Strain fitness (log2 ratio) -2 -1 0 1at 1287.253 kb on + strand, within BWI76_RS06125at 1287.364 kb on + strand, within BWI76_RS06125at 1287.477 kb on + strand, within BWI76_RS06125at 1287.490 kb on - strand, within BWI76_RS06125at 1287.506 kb on + strand, within BWI76_RS06125at 1287.657 kb on + strand, within BWI76_RS06125at 1287.705 kb on + strand, within BWI76_RS06125at 1287.760 kb on - strand, within BWI76_RS06125at 1287.766 kb on - strand, within BWI76_RS06125at 1287.990 kb on + strandat 1288.076 kb on + strandat 1288.122 kb on + strandat 1288.615 kb on + strand, within BWI76_RS06130at 1288.623 kb on - strand, within BWI76_RS06130at 1288.768 kb on - strandat 1288.768 kb on - strandat 1289.043 kb on + strand, within BWI76_RS06135at 1289.056 kb on + strand, within BWI76_RS06135at 1289.240 kb on + strand, within BWI76_RS06135at 1289.294 kb on + strand, within BWI76_RS06135at 1289.345 kb on + strand, within BWI76_RS06135at 1289.545 kb on + strand, within BWI76_RS06135

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB24 MOI 1
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1,287,253 + BWI76_RS06125 0.35 -0.8
1,287,364 + BWI76_RS06125 0.45 +0.7
1,287,477 + BWI76_RS06125 0.56 +0.8
1,287,490 - BWI76_RS06125 0.57 -0.9
1,287,506 + BWI76_RS06125 0.58 -0.3
1,287,657 + BWI76_RS06125 0.72 +0.2
1,287,705 + BWI76_RS06125 0.77 -0.2
1,287,760 - BWI76_RS06125 0.82 -0.1
1,287,766 - BWI76_RS06125 0.82 +0.2
1,287,990 + +0.6
1,288,076 + -0.1
1,288,122 + +1.0
1,288,615 + BWI76_RS06130 0.81 -2.4
1,288,623 - BWI76_RS06130 0.82 -0.7
1,288,768 - +1.5
1,288,768 - -1.5
1,289,043 + BWI76_RS06135 0.10 -1.5
1,289,056 + BWI76_RS06135 0.12 -0.8
1,289,240 + BWI76_RS06135 0.27 -0.3
1,289,294 + BWI76_RS06135 0.31 -1.2
1,289,345 + BWI76_RS06135 0.36 -0.5
1,289,545 + BWI76_RS06135 0.52 +1.2

Or see this region's nucleotide sequence