Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24180

Experiment: KLEB24 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24175 and BWI76_RS24180 are separated by 70 nucleotidesBWI76_RS24180 and BWI76_RS24185 are separated by 168 nucleotidesBWI76_RS24185 and BWI76_RS24190 are separated by 105 nucleotides BWI76_RS24175: BWI76_RS24175 - ornithine decarboxylase, at 5,039,952 to 5,042,090 _RS24175 BWI76_RS24180: BWI76_RS24180 - hypothetical protein, at 5,042,161 to 5,042,359 _RS24180 BWI76_RS24185: BWI76_RS24185 - membrane protein, at 5,042,528 to 5,043,244 _RS24185 BWI76_RS24190: BWI76_RS24190 - tRNA-Phe, at 5,043,350 to 5,043,425 _RS24190 Position (kb) 5042 5043Strain fitness (log2 ratio) -2 -1 0 1 2at 5041.172 kb on + strand, within BWI76_RS24175at 5041.187 kb on - strand, within BWI76_RS24175at 5041.208 kb on + strand, within BWI76_RS24175at 5041.216 kb on + strand, within BWI76_RS24175at 5041.398 kb on - strand, within BWI76_RS24175at 5041.411 kb on + strand, within BWI76_RS24175at 5041.580 kb on - strand, within BWI76_RS24175at 5041.638 kb on - strand, within BWI76_RS24175at 5041.690 kb on + strand, within BWI76_RS24175at 5041.839 kb on + strand, within BWI76_RS24175at 5041.920 kb on + strandat 5042.011 kb on - strandat 5042.013 kb on + strandat 5042.013 kb on + strandat 5042.013 kb on + strandat 5042.021 kb on - strandat 5042.021 kb on - strandat 5042.036 kb on + strandat 5042.057 kb on - strandat 5042.138 kb on + strandat 5042.141 kb on + strandat 5042.160 kb on + strandat 5042.249 kb on + strand, within BWI76_RS24180at 5042.257 kb on - strand, within BWI76_RS24180at 5042.372 kb on + strandat 5042.407 kb on + strandat 5042.407 kb on + strandat 5042.528 kb on + strandat 5042.692 kb on + strand, within BWI76_RS24185at 5042.722 kb on - strand, within BWI76_RS24185at 5042.773 kb on + strand, within BWI76_RS24185at 5042.781 kb on - strand, within BWI76_RS24185at 5042.843 kb on + strand, within BWI76_RS24185at 5042.999 kb on - strand, within BWI76_RS24185at 5043.130 kb on - strand, within BWI76_RS24185at 5043.138 kb on - strand, within BWI76_RS24185

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB24 MOI 1
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5,041,172 + BWI76_RS24175 0.57 -0.6
5,041,187 - BWI76_RS24175 0.58 +1.8
5,041,208 + BWI76_RS24175 0.59 +1.3
5,041,216 + BWI76_RS24175 0.59 -0.3
5,041,398 - BWI76_RS24175 0.68 -0.1
5,041,411 + BWI76_RS24175 0.68 +1.6
5,041,580 - BWI76_RS24175 0.76 -0.6
5,041,638 - BWI76_RS24175 0.79 -1.2
5,041,690 + BWI76_RS24175 0.81 +1.0
5,041,839 + BWI76_RS24175 0.88 +0.2
5,041,920 + +0.1
5,042,011 - +0.4
5,042,013 + +0.6
5,042,013 + -0.5
5,042,013 + -1.7
5,042,021 - +0.8
5,042,021 - -0.4
5,042,036 + +0.2
5,042,057 - -0.1
5,042,138 + +0.3
5,042,141 + -1.7
5,042,160 + +0.1
5,042,249 + BWI76_RS24180 0.44 -0.1
5,042,257 - BWI76_RS24180 0.48 -1.4
5,042,372 + -0.3
5,042,407 + -0.2
5,042,407 + +0.4
5,042,528 + +0.3
5,042,692 + BWI76_RS24185 0.23 +0.0
5,042,722 - BWI76_RS24185 0.27 -0.8
5,042,773 + BWI76_RS24185 0.34 -0.1
5,042,781 - BWI76_RS24185 0.35 -0.6
5,042,843 + BWI76_RS24185 0.44 -1.2
5,042,999 - BWI76_RS24185 0.66 +1.3
5,043,130 - BWI76_RS24185 0.84 -0.6
5,043,138 - BWI76_RS24185 0.85 -2.4

Or see this region's nucleotide sequence