Experiment: KLEB24 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24175 and BWI76_RS24180 are separated by 70 nucleotides BWI76_RS24180 and BWI76_RS24185 are separated by 168 nucleotides BWI76_RS24185 and BWI76_RS24190 are separated by 105 nucleotides
BWI76_RS24175: BWI76_RS24175 - ornithine decarboxylase, at 5,039,952 to 5,042,090
_RS24175
BWI76_RS24180: BWI76_RS24180 - hypothetical protein, at 5,042,161 to 5,042,359
_RS24180
BWI76_RS24185: BWI76_RS24185 - membrane protein, at 5,042,528 to 5,043,244
_RS24185
BWI76_RS24190: BWI76_RS24190 - tRNA-Phe, at 5,043,350 to 5,043,425
_RS24190
Position (kb)
5042
5043 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5041.172 kb on + strand, within BWI76_RS24175 at 5041.187 kb on - strand, within BWI76_RS24175 at 5041.208 kb on + strand, within BWI76_RS24175 at 5041.216 kb on + strand, within BWI76_RS24175 at 5041.398 kb on - strand, within BWI76_RS24175 at 5041.411 kb on + strand, within BWI76_RS24175 at 5041.580 kb on - strand, within BWI76_RS24175 at 5041.638 kb on - strand, within BWI76_RS24175 at 5041.690 kb on + strand, within BWI76_RS24175 at 5041.839 kb on + strand, within BWI76_RS24175 at 5041.920 kb on + strand at 5042.011 kb on - strand at 5042.013 kb on + strand at 5042.013 kb on + strand at 5042.013 kb on + strand at 5042.021 kb on - strand at 5042.021 kb on - strand at 5042.036 kb on + strand at 5042.057 kb on - strand at 5042.138 kb on + strand at 5042.141 kb on + strand at 5042.160 kb on + strand at 5042.249 kb on + strand, within BWI76_RS24180 at 5042.257 kb on - strand, within BWI76_RS24180 at 5042.372 kb on + strand at 5042.407 kb on + strand at 5042.407 kb on + strand at 5042.528 kb on + strand at 5042.692 kb on + strand, within BWI76_RS24185 at 5042.722 kb on - strand, within BWI76_RS24185 at 5042.773 kb on + strand, within BWI76_RS24185 at 5042.781 kb on - strand, within BWI76_RS24185 at 5042.843 kb on + strand, within BWI76_RS24185 at 5042.999 kb on - strand, within BWI76_RS24185 at 5043.130 kb on - strand, within BWI76_RS24185 at 5043.138 kb on - strand, within BWI76_RS24185
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB24 MOI 1 remove 5,041,172 + BWI76_RS24175 0.57 -0.6 5,041,187 - BWI76_RS24175 0.58 +1.8 5,041,208 + BWI76_RS24175 0.59 +1.3 5,041,216 + BWI76_RS24175 0.59 -0.3 5,041,398 - BWI76_RS24175 0.68 -0.1 5,041,411 + BWI76_RS24175 0.68 +1.6 5,041,580 - BWI76_RS24175 0.76 -0.6 5,041,638 - BWI76_RS24175 0.79 -1.2 5,041,690 + BWI76_RS24175 0.81 +1.0 5,041,839 + BWI76_RS24175 0.88 +0.2 5,041,920 + +0.1 5,042,011 - +0.4 5,042,013 + +0.6 5,042,013 + -0.5 5,042,013 + -1.7 5,042,021 - +0.8 5,042,021 - -0.4 5,042,036 + +0.2 5,042,057 - -0.1 5,042,138 + +0.3 5,042,141 + -1.7 5,042,160 + +0.1 5,042,249 + BWI76_RS24180 0.44 -0.1 5,042,257 - BWI76_RS24180 0.48 -1.4 5,042,372 + -0.3 5,042,407 + -0.2 5,042,407 + +0.4 5,042,528 + +0.3 5,042,692 + BWI76_RS24185 0.23 +0.0 5,042,722 - BWI76_RS24185 0.27 -0.8 5,042,773 + BWI76_RS24185 0.34 -0.1 5,042,781 - BWI76_RS24185 0.35 -0.6 5,042,843 + BWI76_RS24185 0.44 -1.2 5,042,999 - BWI76_RS24185 0.66 +1.3 5,043,130 - BWI76_RS24185 0.84 -0.6 5,043,138 - BWI76_RS24185 0.85 -2.4
Or see this region's nucleotide sequence