Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10595

Experiment: KLEB24 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10590 and BWI76_RS10595 overlap by 4 nucleotidesBWI76_RS10595 and BWI76_RS10600 are separated by 55 nucleotides BWI76_RS10590: BWI76_RS10590 - class V aminotransferase, at 2,235,718 to 2,236,959 _RS10590 BWI76_RS10595: BWI76_RS10595 - allantoate amidohydrolase, at 2,236,956 to 2,238,218 _RS10595 BWI76_RS10600: BWI76_RS10600 - pectate lyase, at 2,238,274 to 2,239,983 _RS10600 Position (kb) 2236 2237 2238 2239Strain fitness (log2 ratio) -1 0 1at 2236.016 kb on + strand, within BWI76_RS10590at 2236.465 kb on + strand, within BWI76_RS10590at 2236.477 kb on + strand, within BWI76_RS10590at 2236.631 kb on - strand, within BWI76_RS10590at 2236.775 kb on + strand, within BWI76_RS10590at 2236.775 kb on + strandat 2236.797 kb on + strand, within BWI76_RS10590at 2236.818 kb on + strand, within BWI76_RS10590at 2236.818 kb on + strand, within BWI76_RS10590at 2236.873 kb on + strandat 2236.960 kb on + strandat 2237.139 kb on - strand, within BWI76_RS10595at 2237.192 kb on - strand, within BWI76_RS10595at 2237.402 kb on + strand, within BWI76_RS10595at 2237.518 kb on + strand, within BWI76_RS10595at 2237.603 kb on - strand, within BWI76_RS10595at 2237.660 kb on + strand, within BWI76_RS10595at 2237.826 kb on + strand, within BWI76_RS10595at 2238.015 kb on + strand, within BWI76_RS10595at 2238.165 kb on - strandat 2238.252 kb on - strandat 2238.290 kb on + strandat 2238.298 kb on - strandat 2238.577 kb on + strand, within BWI76_RS10600at 2238.697 kb on + strand, within BWI76_RS10600at 2238.896 kb on + strand, within BWI76_RS10600at 2238.901 kb on + strand, within BWI76_RS10600at 2238.904 kb on - strand, within BWI76_RS10600at 2238.933 kb on + strand, within BWI76_RS10600at 2239.140 kb on + strand, within BWI76_RS10600at 2239.218 kb on - strand, within BWI76_RS10600

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB24 MOI 1
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2,236,016 + BWI76_RS10590 0.24 -0.7
2,236,465 + BWI76_RS10590 0.60 +0.0
2,236,477 + BWI76_RS10590 0.61 -0.6
2,236,631 - BWI76_RS10590 0.74 +0.2
2,236,775 + BWI76_RS10590 0.85 -0.6
2,236,775 + -0.6
2,236,797 + BWI76_RS10590 0.87 +0.3
2,236,818 + BWI76_RS10590 0.89 +1.2
2,236,818 + BWI76_RS10590 0.89 -0.6
2,236,873 + +0.2
2,236,960 + +0.1
2,237,139 - BWI76_RS10595 0.14 -1.7
2,237,192 - BWI76_RS10595 0.19 -0.8
2,237,402 + BWI76_RS10595 0.35 -1.0
2,237,518 + BWI76_RS10595 0.44 +0.1
2,237,603 - BWI76_RS10595 0.51 -0.1
2,237,660 + BWI76_RS10595 0.56 -1.0
2,237,826 + BWI76_RS10595 0.69 -1.4
2,238,015 + BWI76_RS10595 0.84 -0.8
2,238,165 - +0.6
2,238,252 - -1.2
2,238,290 + -0.7
2,238,298 - +0.5
2,238,577 + BWI76_RS10600 0.18 -0.7
2,238,697 + BWI76_RS10600 0.25 -0.4
2,238,896 + BWI76_RS10600 0.36 -1.7
2,238,901 + BWI76_RS10600 0.37 +0.6
2,238,904 - BWI76_RS10600 0.37 +1.0
2,238,933 + BWI76_RS10600 0.39 -0.2
2,239,140 + BWI76_RS10600 0.51 -0.2
2,239,218 - BWI76_RS10600 0.55 +0.4

Or see this region's nucleotide sequence