Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10520

Experiment: KLEB24 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10505 and BWI76_RS10510 overlap by 23 nucleotidesBWI76_RS10510 and BWI76_RS10515 overlap by 4 nucleotidesBWI76_RS10515 and BWI76_RS10520 are separated by 41 nucleotidesBWI76_RS10520 and BWI76_RS10525 are separated by 109 nucleotides BWI76_RS10505: BWI76_RS10505 - putative guanine/xanthin permease, at 2,220,168 to 2,221,550 _RS10505 BWI76_RS10510: BWI76_RS10510 - OHCU decarboxylase, at 2,221,528 to 2,222,028 _RS10510 BWI76_RS10515: BWI76_RS10515 - 5-hydroxyisourate hydrolase, at 2,222,025 to 2,222,351 _RS10515 BWI76_RS10520: BWI76_RS10520 - guanine deaminase, at 2,222,393 to 2,223,712 _RS10520 BWI76_RS10525: BWI76_RS10525 - cytosine/purines uracil thiamine allantoin permease, at 2,223,822 to 2,225,309 _RS10525 Position (kb) 2222 2223 2224Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2221.796 kb on + strand, within BWI76_RS10510at 2221.814 kb on - strand, within BWI76_RS10510at 2221.970 kb on + strand, within BWI76_RS10510at 2222.383 kb on + strandat 2222.483 kb on + strandat 2222.639 kb on + strand, within BWI76_RS10520at 2222.647 kb on - strand, within BWI76_RS10520at 2222.647 kb on - strand, within BWI76_RS10520at 2222.711 kb on - strand, within BWI76_RS10520at 2222.874 kb on + strand, within BWI76_RS10520at 2222.973 kb on + strand, within BWI76_RS10520at 2223.258 kb on + strand, within BWI76_RS10520at 2223.411 kb on - strand, within BWI76_RS10520at 2223.419 kb on - strand, within BWI76_RS10520at 2223.564 kb on + strand, within BWI76_RS10520at 2223.661 kb on - strandat 2223.998 kb on - strand, within BWI76_RS10525at 2224.400 kb on + strand, within BWI76_RS10525at 2224.465 kb on - strand, within BWI76_RS10525at 2224.654 kb on - strand, within BWI76_RS10525

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB24 MOI 1
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2,221,796 + BWI76_RS10510 0.53 -1.2
2,221,814 - BWI76_RS10510 0.57 +0.5
2,221,970 + BWI76_RS10510 0.88 -0.5
2,222,383 + -0.6
2,222,483 + +0.0
2,222,639 + BWI76_RS10520 0.19 -0.9
2,222,647 - BWI76_RS10520 0.19 -1.0
2,222,647 - BWI76_RS10520 0.19 -0.3
2,222,711 - BWI76_RS10520 0.24 -0.6
2,222,874 + BWI76_RS10520 0.36 -0.9
2,222,973 + BWI76_RS10520 0.44 -1.2
2,223,258 + BWI76_RS10520 0.66 -3.8
2,223,411 - BWI76_RS10520 0.77 +1.0
2,223,419 - BWI76_RS10520 0.78 -0.9
2,223,564 + BWI76_RS10520 0.89 -0.7
2,223,661 - -0.9
2,223,998 - BWI76_RS10525 0.12 +0.2
2,224,400 + BWI76_RS10525 0.39 -0.5
2,224,465 - BWI76_RS10525 0.43 +0.2
2,224,654 - BWI76_RS10525 0.56 +0.7

Or see this region's nucleotide sequence