Experiment: KLEB24 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08925 and BWI76_RS08930 are separated by 122 nucleotides BWI76_RS08930 and BWI76_RS08935 are separated by 285 nucleotides BWI76_RS08935 and BWI76_RS08940 are separated by 68 nucleotides BWI76_RS08940 and BWI76_RS08945 are separated by 45 nucleotides
BWI76_RS08925: BWI76_RS08925 - DNA-binding protein YbiB, at 1,880,663 to 1,881,631
_RS08925
BWI76_RS08930: BWI76_RS08930 - hypothetical protein, at 1,881,754 to 1,882,014
_RS08930
BWI76_RS08935: BWI76_RS08935 - hypothetical protein, at 1,882,300 to 1,882,566
_RS08935
BWI76_RS08940: BWI76_RS08940 - PKHD-type hydroxylase, at 1,882,635 to 1,883,312
_RS08940
BWI76_RS08945: BWI76_RS08945 - catecholate siderophore receptor Fiu, at 1,883,358 to 1,885,646
_RS08945
Position (kb)
1882
1883 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1881.368 kb on + strand, within BWI76_RS08925 at 1881.510 kb on + strand, within BWI76_RS08925 at 1881.706 kb on + strand at 1881.727 kb on - strand at 1881.768 kb on + strand at 1882.032 kb on - strand at 1882.034 kb on + strand at 1882.034 kb on + strand at 1882.211 kb on + strand at 1882.571 kb on - strand at 1882.576 kb on + strand at 1882.589 kb on + strand at 1882.591 kb on + strand at 1882.661 kb on + strand at 1882.839 kb on + strand, within BWI76_RS08940 at 1882.898 kb on + strand, within BWI76_RS08940 at 1883.066 kb on - strand, within BWI76_RS08940 at 1883.139 kb on + strand, within BWI76_RS08940 at 1883.152 kb on + strand, within BWI76_RS08940 at 1883.177 kb on - strand, within BWI76_RS08940 at 1883.457 kb on - strand at 1883.539 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB24 MOI 1 remove 1,881,368 + BWI76_RS08925 0.73 -0.1 1,881,510 + BWI76_RS08925 0.87 -0.6 1,881,706 + +0.9 1,881,727 - -1.2 1,881,768 + -0.3 1,882,032 - -1.3 1,882,034 + -3.3 1,882,034 + +0.3 1,882,211 + -0.2 1,882,571 - +0.1 1,882,576 + +0.4 1,882,589 + +0.8 1,882,591 + -0.5 1,882,661 + -0.3 1,882,839 + BWI76_RS08940 0.30 -0.8 1,882,898 + BWI76_RS08940 0.39 -0.2 1,883,066 - BWI76_RS08940 0.64 -0.0 1,883,139 + BWI76_RS08940 0.74 -0.4 1,883,152 + BWI76_RS08940 0.76 -1.2 1,883,177 - BWI76_RS08940 0.80 +0.1 1,883,457 - +0.0 1,883,539 + -1.8
Or see this region's nucleotide sequence