Experiment: KLEB24 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03735 and BWI76_RS03740 overlap by 4 nucleotides BWI76_RS03740 and BWI76_RS03745 are separated by 8 nucleotides BWI76_RS03745 and BWI76_RS03750 are separated by 82 nucleotides BWI76_RS03750 and BWI76_RS03755 are separated by 373 nucleotides
BWI76_RS03735: BWI76_RS03735 - hypothetical protein, at 774,540 to 774,794
_RS03735
BWI76_RS03740: BWI76_RS03740 - hypothetical protein, at 774,791 to 775,558
_RS03740
BWI76_RS03745: BWI76_RS03745 - putative 2-hydroxyglutaryl-CoA dehydratase, at 775,567 to 776,718
_RS03745
BWI76_RS03750: BWI76_RS03750 - hypothetical protein, at 776,801 to 777,040
_RS03750
BWI76_RS03755: BWI76_RS03755 - phosphoadenosine phosphosulfate reductase, at 777,414 to 778,625
_RS03755
Position (kb) 775
776
777 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 774.808 kb on + strand at 774.873 kb on + strand, within BWI76_RS03740 at 774.889 kb on + strand, within BWI76_RS03740 at 774.897 kb on - strand, within BWI76_RS03740 at 774.897 kb on - strand, within BWI76_RS03740 at 775.074 kb on + strand, within BWI76_RS03740 at 775.279 kb on - strand, within BWI76_RS03740 at 775.402 kb on + strand, within BWI76_RS03740 at 775.432 kb on + strand, within BWI76_RS03740 at 775.467 kb on + strand, within BWI76_RS03740 at 775.507 kb on + strand at 775.598 kb on + strand at 775.756 kb on - strand, within BWI76_RS03745 at 775.783 kb on - strand, within BWI76_RS03745 at 775.866 kb on + strand, within BWI76_RS03745 at 776.359 kb on - strand, within BWI76_RS03745 at 776.492 kb on - strand, within BWI76_RS03745 at 776.589 kb on + strand, within BWI76_RS03745 at 776.597 kb on - strand, within BWI76_RS03745 at 776.597 kb on - strand, within BWI76_RS03745 at 776.606 kb on + strand at 776.616 kb on + strand at 776.623 kb on + strand at 776.682 kb on + strand at 776.705 kb on - strand at 776.762 kb on + strand at 776.826 kb on - strand, within BWI76_RS03750 at 776.837 kb on - strand, within BWI76_RS03750 at 776.843 kb on + strand, within BWI76_RS03750 at 776.848 kb on + strand, within BWI76_RS03750 at 776.851 kb on - strand, within BWI76_RS03750 at 776.851 kb on - strand, within BWI76_RS03750 at 776.851 kb on - strand, within BWI76_RS03750 at 776.855 kb on + strand, within BWI76_RS03750 at 776.856 kb on - strand, within BWI76_RS03750 at 776.859 kb on - strand, within BWI76_RS03750 at 776.863 kb on - strand, within BWI76_RS03750 at 776.870 kb on - strand, within BWI76_RS03750 at 776.900 kb on + strand, within BWI76_RS03750 at 776.900 kb on + strand, within BWI76_RS03750 at 776.900 kb on + strand, within BWI76_RS03750 at 776.901 kb on - strand, within BWI76_RS03750 at 776.911 kb on - strand, within BWI76_RS03750 at 776.959 kb on + strand, within BWI76_RS03750 at 776.978 kb on + strand, within BWI76_RS03750 at 776.978 kb on + strand, within BWI76_RS03750 at 776.987 kb on - strand, within BWI76_RS03750 at 776.989 kb on + strand, within BWI76_RS03750 at 776.989 kb on + strand, within BWI76_RS03750 at 776.997 kb on - strand, within BWI76_RS03750 at 776.997 kb on - strand, within BWI76_RS03750 at 776.997 kb on - strand, within BWI76_RS03750 at 776.999 kb on + strand, within BWI76_RS03750 at 777.001 kb on + strand, within BWI76_RS03750 at 777.009 kb on - strand, within BWI76_RS03750 at 777.009 kb on - strand, within BWI76_RS03750 at 777.009 kb on - strand, within BWI76_RS03750 at 777.025 kb on + strand at 777.027 kb on - strand at 777.035 kb on + strand at 777.036 kb on + strand at 777.044 kb on - strand at 777.083 kb on + strand at 777.083 kb on + strand at 777.083 kb on + strand at 777.083 kb on + strand at 777.091 kb on - strand at 777.091 kb on - strand at 777.091 kb on - strand at 777.119 kb on - strand at 777.137 kb on + strand at 777.137 kb on + strand at 777.145 kb on - strand at 777.175 kb on - strand at 777.182 kb on + strand at 777.182 kb on + strand at 777.191 kb on - strand at 777.191 kb on - strand at 777.191 kb on - strand at 777.191 kb on - strand at 777.192 kb on + strand at 777.270 kb on + strand at 777.278 kb on - strand at 777.280 kb on - strand at 777.294 kb on + strand at 777.294 kb on + strand at 777.294 kb on + strand at 777.302 kb on - strand at 777.302 kb on - strand at 777.308 kb on + strand at 777.329 kb on + strand at 777.329 kb on + strand at 777.329 kb on + strand at 777.329 kb on + strand at 777.329 kb on + strand at 777.337 kb on - strand at 777.337 kb on - strand at 777.337 kb on - strand at 777.337 kb on - strand at 777.337 kb on - strand at 777.337 kb on - strand at 777.339 kb on + strand at 777.339 kb on + strand at 777.339 kb on + strand at 777.339 kb on + strand at 777.339 kb on + strand at 777.339 kb on + strand at 777.339 kb on + strand at 777.339 kb on + strand at 777.339 kb on + strand at 777.347 kb on - strand at 777.347 kb on - strand at 777.347 kb on - strand at 777.347 kb on - strand at 777.347 kb on - strand at 777.347 kb on - strand at 777.376 kb on + strand at 777.384 kb on - strand at 777.404 kb on + strand at 777.406 kb on + strand at 777.406 kb on + strand at 777.407 kb on + strand at 777.414 kb on - strand at 777.453 kb on + strand at 777.453 kb on + strand at 777.453 kb on + strand at 777.453 kb on + strand at 777.453 kb on + strand at 777.453 kb on + strand at 777.453 kb on + strand at 777.453 kb on + strand at 777.453 kb on + strand at 777.453 kb on + strand at 777.453 kb on + strand at 777.453 kb on + strand at 777.453 kb on + strand at 777.453 kb on + strand at 777.453 kb on + strand at 777.453 kb on + strand at 777.453 kb on + strand at 777.453 kb on + strand at 777.453 kb on + strand at 777.453 kb on + strand at 777.453 kb on + strand at 777.453 kb on + strand at 777.453 kb on + strand at 777.453 kb on + strand at 777.453 kb on + strand at 777.453 kb on + strand at 777.461 kb on - strand at 777.461 kb on - strand at 777.461 kb on - strand at 777.461 kb on - strand at 777.461 kb on - strand at 777.461 kb on - strand at 777.461 kb on - strand at 777.461 kb on - strand at 777.461 kb on - strand at 777.461 kb on - strand at 777.461 kb on - strand at 777.461 kb on - strand at 777.461 kb on - strand at 777.461 kb on - strand at 777.461 kb on - strand at 777.461 kb on - strand at 777.461 kb on - strand at 777.461 kb on - strand at 777.461 kb on - strand at 777.461 kb on - strand at 777.461 kb on - strand at 777.461 kb on - strand at 777.462 kb on + strand at 777.462 kb on + strand at 777.467 kb on + strand at 777.467 kb on + strand at 777.470 kb on - strand at 777.473 kb on + strand at 777.476 kb on + strand at 777.494 kb on + strand at 777.507 kb on - strand at 777.531 kb on + strand at 777.531 kb on + strand at 777.539 kb on - strand, within BWI76_RS03755 at 777.545 kb on + strand, within BWI76_RS03755 at 777.545 kb on + strand, within BWI76_RS03755 at 777.552 kb on + strand, within BWI76_RS03755 at 777.585 kb on + strand, within BWI76_RS03755 at 777.593 kb on - strand, within BWI76_RS03755 at 777.599 kb on - strand, within BWI76_RS03755 at 777.619 kb on - strand, within BWI76_RS03755 at 777.624 kb on + strand, within BWI76_RS03755 at 777.653 kb on + strand, within BWI76_RS03755 at 777.655 kb on + strand, within BWI76_RS03755 at 777.655 kb on + strand, within BWI76_RS03755 at 777.663 kb on - strand, within BWI76_RS03755 at 777.663 kb on - strand, within BWI76_RS03755 at 777.663 kb on - strand, within BWI76_RS03755 at 777.705 kb on + strand, within BWI76_RS03755 at 777.707 kb on - strand, within BWI76_RS03755 at 777.712 kb on + strand, within BWI76_RS03755 at 777.712 kb on + strand, within BWI76_RS03755 at 777.712 kb on + strand, within BWI76_RS03755 at 777.712 kb on + strand, within BWI76_RS03755
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB24 MOI 1 remove 774,808 + +0.2 774,873 + BWI76_RS03740 0.11 -0.6 774,889 + BWI76_RS03740 0.13 -0.0 774,897 - BWI76_RS03740 0.14 -1.0 774,897 - BWI76_RS03740 0.14 +3.3 775,074 + BWI76_RS03740 0.37 -0.2 775,279 - BWI76_RS03740 0.64 -1.6 775,402 + BWI76_RS03740 0.80 +0.5 775,432 + BWI76_RS03740 0.83 -0.7 775,467 + BWI76_RS03740 0.88 -0.8 775,507 + +0.2 775,598 + +0.2 775,756 - BWI76_RS03745 0.16 -0.6 775,783 - BWI76_RS03745 0.19 -0.1 775,866 + BWI76_RS03745 0.26 -0.6 776,359 - BWI76_RS03745 0.69 -0.7 776,492 - BWI76_RS03745 0.80 -1.1 776,589 + BWI76_RS03745 0.89 -0.8 776,597 - BWI76_RS03745 0.89 +0.2 776,597 - BWI76_RS03745 0.89 -1.2 776,606 + +1.1 776,616 + -1.1 776,623 + -3.4 776,682 + +0.5 776,705 - +1.8 776,762 + +0.4 776,826 - BWI76_RS03750 0.10 +0.1 776,837 - BWI76_RS03750 0.15 +0.4 776,843 + BWI76_RS03750 0.17 -0.1 776,848 + BWI76_RS03750 0.20 -1.2 776,851 - BWI76_RS03750 0.21 +0.0 776,851 - BWI76_RS03750 0.21 +0.0 776,851 - BWI76_RS03750 0.21 -0.9 776,855 + BWI76_RS03750 0.23 +1.4 776,856 - BWI76_RS03750 0.23 -0.2 776,859 - BWI76_RS03750 0.24 -0.6 776,863 - BWI76_RS03750 0.26 -0.2 776,870 - BWI76_RS03750 0.29 -0.2 776,900 + BWI76_RS03750 0.41 +0.5 776,900 + BWI76_RS03750 0.41 +1.9 776,900 + BWI76_RS03750 0.41 +0.5 776,901 - BWI76_RS03750 0.42 -0.3 776,911 - BWI76_RS03750 0.46 +0.1 776,959 + BWI76_RS03750 0.66 -0.2 776,978 + BWI76_RS03750 0.74 -0.3 776,978 + BWI76_RS03750 0.74 +3.8 776,987 - BWI76_RS03750 0.78 -0.2 776,989 + BWI76_RS03750 0.78 -0.3 776,989 + BWI76_RS03750 0.78 -0.3 776,997 - BWI76_RS03750 0.82 +0.4 776,997 - BWI76_RS03750 0.82 -1.2 776,997 - BWI76_RS03750 0.82 +0.5 776,999 + BWI76_RS03750 0.82 +1.3 777,001 + BWI76_RS03750 0.83 -0.5 777,009 - BWI76_RS03750 0.87 +4.0 777,009 - BWI76_RS03750 0.87 +1.2 777,009 - BWI76_RS03750 0.87 +1.4 777,025 + -0.1 777,027 - +0.1 777,035 + +1.7 777,036 + +0.9 777,044 - +0.5 777,083 + -1.4 777,083 + -2.6 777,083 + +0.7 777,083 + +0.7 777,091 - +0.4 777,091 - -0.5 777,091 - -0.5 777,119 - -0.5 777,137 + +0.1 777,137 + +0.1 777,145 - +1.4 777,175 - +0.5 777,182 + -0.3 777,182 + +0.1 777,191 - -1.3 777,191 - -0.6 777,191 - +0.3 777,191 - +1.4 777,192 + -0.1 777,270 + -0.9 777,278 - -2.0 777,280 - +0.2 777,294 + -0.0 777,294 + -0.4 777,294 + -0.2 777,302 - -1.1 777,302 - -0.1 777,308 + -1.5 777,329 + -0.5 777,329 + -0.7 777,329 + -2.1 777,329 + -2.0 777,329 + -0.4 777,337 - +1.7 777,337 - +1.9 777,337 - -0.1 777,337 - +1.4 777,337 - +0.1 777,337 - +3.1 777,339 + +1.2 777,339 + +0.5 777,339 + -0.0 777,339 + +0.4 777,339 + -1.5 777,339 + +0.1 777,339 + +1.0 777,339 + +1.0 777,339 + -0.2 777,347 - -0.5 777,347 - +0.5 777,347 - +0.5 777,347 - +0.5 777,347 - +0.0 777,347 - +0.3 777,376 + +0.4 777,384 - -0.2 777,404 + +0.5 777,406 + +1.0 777,406 + +2.4 777,407 + -1.2 777,414 - -0.3 777,453 + -1.5 777,453 + -0.4 777,453 + -0.8 777,453 + +0.3 777,453 + +0.3 777,453 + +0.3 777,453 + -0.4 777,453 + -0.4 777,453 + -0.5 777,453 + -0.9 777,453 + -0.8 777,453 + +0.2 777,453 + -1.0 777,453 + -0.4 777,453 + +0.0 777,453 + +0.1 777,453 + +0.0 777,453 + -3.2 777,453 + -1.8 777,453 + -1.2 777,453 + +0.8 777,453 + -1.2 777,453 + -0.6 777,453 + +0.5 777,453 + -0.2 777,453 + +1.2 777,461 - -0.1 777,461 - -2.7 777,461 - -1.0 777,461 - +0.5 777,461 - -0.6 777,461 - -1.2 777,461 - +0.2 777,461 - -0.0 777,461 - +0.7 777,461 - +1.8 777,461 - -0.9 777,461 - +0.5 777,461 - +0.5 777,461 - -1.0 777,461 - -1.7 777,461 - +0.1 777,461 - +1.4 777,461 - +0.7 777,461 - -1.5 777,461 - +0.5 777,461 - +2.7 777,461 - +0.2 777,462 + -1.1 777,462 + +1.2 777,467 + +0.3 777,467 + -0.5 777,470 - +0.1 777,473 + -0.3 777,476 + -0.7 777,494 + -0.3 777,507 - -0.3 777,531 + +1.4 777,531 + +0.3 777,539 - BWI76_RS03755 0.10 +0.2 777,545 + BWI76_RS03755 0.11 -0.3 777,545 + BWI76_RS03755 0.11 -0.3 777,552 + BWI76_RS03755 0.11 -1.1 777,585 + BWI76_RS03755 0.14 -0.5 777,593 - BWI76_RS03755 0.15 +3.6 777,599 - BWI76_RS03755 0.15 -0.0 777,619 - BWI76_RS03755 0.17 -1.8 777,624 + BWI76_RS03755 0.17 +0.5 777,653 + BWI76_RS03755 0.20 +0.4 777,655 + BWI76_RS03755 0.20 +0.6 777,655 + BWI76_RS03755 0.20 +0.3 777,663 - BWI76_RS03755 0.21 +0.5 777,663 - BWI76_RS03755 0.21 -0.7 777,663 - BWI76_RS03755 0.21 -1.6 777,705 + BWI76_RS03755 0.24 -0.5 777,707 - BWI76_RS03755 0.24 +0.0 777,712 + BWI76_RS03755 0.25 -0.7 777,712 + BWI76_RS03755 0.25 -1.5 777,712 + BWI76_RS03755 0.25 -0.7 777,712 + BWI76_RS03755 0.25 -0.1
Or see this region's nucleotide sequence