Experiment: KLEB24 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01870 and BWI76_RS01875 are separated by 122 nucleotides BWI76_RS01875 and BWI76_RS01880 are separated by 69 nucleotides BWI76_RS01880 and BWI76_RS01885 are separated by 133 nucleotides BWI76_RS01885 and BWI76_RS01890 are separated by 90 nucleotides
BWI76_RS01870: BWI76_RS01870 - diacylglycerol kinase, at 382,614 to 382,982
_RS01870
BWI76_RS01875: BWI76_RS01875 - repressor LexA, at 383,105 to 383,713
_RS01875
BWI76_RS01880: BWI76_RS01880 - MATE family efflux transporter, at 383,783 to 385,099
_RS01880
BWI76_RS01885: BWI76_RS01885 - CsbD family protein, at 385,233 to 385,445
_RS01885
BWI76_RS01890: BWI76_RS01890 - transcriptional regulator Zur, at 385,536 to 386,051
_RS01890
Position (kb) 383
384
385
386 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 382.798 kb on - strand, within BWI76_RS01870 at 382.803 kb on - strand, within BWI76_RS01870 at 382.873 kb on + strand, within BWI76_RS01870 at 382.907 kb on - strand, within BWI76_RS01870 at 382.995 kb on - strand at 383.810 kb on + strand at 383.868 kb on - strand at 383.899 kb on - strand at 383.927 kb on - strand, within BWI76_RS01880 at 383.952 kb on + strand, within BWI76_RS01880 at 384.216 kb on - strand, within BWI76_RS01880 at 384.295 kb on - strand, within BWI76_RS01880 at 384.328 kb on + strand, within BWI76_RS01880 at 384.397 kb on + strand, within BWI76_RS01880 at 384.405 kb on - strand, within BWI76_RS01880 at 384.414 kb on + strand, within BWI76_RS01880 at 384.660 kb on + strand, within BWI76_RS01880 at 384.670 kb on + strand, within BWI76_RS01880 at 384.670 kb on + strand, within BWI76_RS01880 at 384.678 kb on - strand, within BWI76_RS01880 at 384.918 kb on + strand, within BWI76_RS01880 at 384.926 kb on - strand, within BWI76_RS01880 at 384.937 kb on - strand, within BWI76_RS01880 at 384.962 kb on + strand, within BWI76_RS01880 at 385.086 kb on - strand at 385.190 kb on + strand at 385.328 kb on + strand, within BWI76_RS01885 at 385.599 kb on - strand, within BWI76_RS01890 at 385.746 kb on + strand, within BWI76_RS01890 at 385.913 kb on + strand, within BWI76_RS01890 at 385.921 kb on - strand, within BWI76_RS01890 at 385.921 kb on - strand, within BWI76_RS01890 at 385.937 kb on + strand, within BWI76_RS01890 at 386.040 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB24 MOI 1 remove 382,798 - BWI76_RS01870 0.50 -0.4 382,803 - BWI76_RS01870 0.51 +0.8 382,873 + BWI76_RS01870 0.70 +2.9 382,907 - BWI76_RS01870 0.79 +0.5 382,995 - +0.2 383,810 + +1.9 383,868 - -0.6 383,899 - -0.8 383,927 - BWI76_RS01880 0.11 -1.7 383,952 + BWI76_RS01880 0.13 -0.6 384,216 - BWI76_RS01880 0.33 -0.9 384,295 - BWI76_RS01880 0.39 -0.9 384,328 + BWI76_RS01880 0.41 +0.7 384,397 + BWI76_RS01880 0.47 -0.4 384,405 - BWI76_RS01880 0.47 -2.5 384,414 + BWI76_RS01880 0.48 +1.2 384,660 + BWI76_RS01880 0.67 -0.6 384,670 + BWI76_RS01880 0.67 -0.2 384,670 + BWI76_RS01880 0.67 +0.0 384,678 - BWI76_RS01880 0.68 -3.2 384,918 + BWI76_RS01880 0.86 -1.5 384,926 - BWI76_RS01880 0.87 -1.2 384,937 - BWI76_RS01880 0.88 -0.7 384,962 + BWI76_RS01880 0.90 -1.0 385,086 - +0.4 385,190 + +0.6 385,328 + BWI76_RS01885 0.45 +1.5 385,599 - BWI76_RS01890 0.12 -0.4 385,746 + BWI76_RS01890 0.41 -0.6 385,913 + BWI76_RS01890 0.73 -0.5 385,921 - BWI76_RS01890 0.75 -1.9 385,921 - BWI76_RS01890 0.75 +0.1 385,937 + BWI76_RS01890 0.78 -0.8 386,040 + -1.1
Or see this region's nucleotide sequence