Experiment: KLEB29 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22955 and BWI76_RS22960 are separated by 353 nucleotides BWI76_RS22960 and BWI76_RS22965 are separated by 198 nucleotides BWI76_RS22965 and BWI76_RS22970 overlap by 1 nucleotides BWI76_RS22970 and BWI76_RS22975 are separated by 139 nucleotides
BWI76_RS22955: BWI76_RS22955 - transcriptional regulator GcvA, at 4,792,721 to 4,793,638
_RS22955
BWI76_RS22960: BWI76_RS22960 - YgdI/YgdR family lipoprotein, at 4,793,992 to 4,794,216
_RS22960
BWI76_RS22965: BWI76_RS22965 - cysteine sulfinate desulfinase, at 4,794,415 to 4,795,620
_RS22965
BWI76_RS22970: BWI76_RS22970 - cysteine desulfurase, sulfur acceptor subunit CsdE, at 4,795,620 to 4,796,060
_RS22970
BWI76_RS22975: BWI76_RS22975 - tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA, at 4,796,200 to 4,797,009
_RS22975
Position (kb)
4794
4795
4796 Strain fitness (log2 ratio)
-2
-1
0
1 at 4793.485 kb on + strand, within BWI76_RS22955 at 4793.485 kb on + strand, within BWI76_RS22955 at 4793.636 kb on - strand at 4793.832 kb on + strand at 4793.923 kb on - strand at 4794.029 kb on + strand, within BWI76_RS22960 at 4794.168 kb on + strand, within BWI76_RS22960 at 4794.176 kb on - strand, within BWI76_RS22960 at 4794.266 kb on + strand at 4794.269 kb on - strand at 4794.422 kb on + strand at 4794.714 kb on - strand, within BWI76_RS22965 at 4794.807 kb on + strand, within BWI76_RS22965 at 4794.823 kb on - strand, within BWI76_RS22965 at 4794.904 kb on - strand, within BWI76_RS22965 at 4795.425 kb on + strand, within BWI76_RS22965 at 4795.485 kb on - strand, within BWI76_RS22965 at 4795.627 kb on + strand at 4795.683 kb on - strand, within BWI76_RS22970 at 4796.063 kb on - strand at 4796.075 kb on + strand at 4796.151 kb on + strand at 4796.421 kb on - strand, within BWI76_RS22975 at 4796.438 kb on + strand, within BWI76_RS22975
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB29 MOI 0.1 remove 4,793,485 + BWI76_RS22955 0.83 +0.4 4,793,485 + BWI76_RS22955 0.83 +1.1 4,793,636 - -1.2 4,793,832 + +0.5 4,793,923 - -0.6 4,794,029 + BWI76_RS22960 0.16 +0.6 4,794,168 + BWI76_RS22960 0.78 -0.1 4,794,176 - BWI76_RS22960 0.82 -0.5 4,794,266 + +0.6 4,794,269 - -1.6 4,794,422 + +0.5 4,794,714 - BWI76_RS22965 0.25 -0.6 4,794,807 + BWI76_RS22965 0.33 -0.3 4,794,823 - BWI76_RS22965 0.34 -2.1 4,794,904 - BWI76_RS22965 0.41 -0.5 4,795,425 + BWI76_RS22965 0.84 -0.3 4,795,485 - BWI76_RS22965 0.89 -0.9 4,795,627 + -1.3 4,795,683 - BWI76_RS22970 0.14 +0.9 4,796,063 - +0.4 4,796,075 + -0.5 4,796,151 + -0.5 4,796,421 - BWI76_RS22975 0.27 -0.5 4,796,438 + BWI76_RS22975 0.29 -0.1
Or see this region's nucleotide sequence