Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21940

Experiment: KLEB29 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS21935 and BWI76_RS21940 are separated by 64 nucleotidesBWI76_RS21940 and BWI76_RS21945 are separated by 144 nucleotides BWI76_RS21935: BWI76_RS21935 - MFS transporter, at 4,582,309 to 4,583,502 _RS21935 BWI76_RS21940: BWI76_RS21940 - SDR family oxidoreductase, at 4,583,567 to 4,584,343 _RS21940 BWI76_RS21945: BWI76_RS21945 - LysR family transcriptional regulator, at 4,584,488 to 4,585,408 _RS21945 Position (kb) 4583 4584 4585Strain fitness (log2 ratio) -1 0 1at 4582.771 kb on - strand, within BWI76_RS21935at 4582.831 kb on + strand, within BWI76_RS21935at 4582.831 kb on + strand, within BWI76_RS21935at 4582.986 kb on - strand, within BWI76_RS21935at 4583.084 kb on + strand, within BWI76_RS21935at 4583.227 kb on + strand, within BWI76_RS21935at 4583.323 kb on - strand, within BWI76_RS21935at 4583.323 kb on - strand, within BWI76_RS21935at 4583.652 kb on + strandat 4583.857 kb on - strand, within BWI76_RS21940at 4583.974 kb on - strand, within BWI76_RS21940at 4584.116 kb on - strand, within BWI76_RS21940at 4584.350 kb on + strandat 4584.376 kb on + strandat 4584.386 kb on + strandat 4584.389 kb on - strandat 4584.394 kb on - strandat 4584.394 kb on - strandat 4584.614 kb on + strand, within BWI76_RS21945at 4584.730 kb on + strandat 4584.738 kb on - strand, within BWI76_RS21945at 4585.201 kb on - strand, within BWI76_RS21945at 4585.327 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB29 MOI 0.1
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4,582,771 - BWI76_RS21935 0.39 +0.6
4,582,831 + BWI76_RS21935 0.44 -0.9
4,582,831 + BWI76_RS21935 0.44 -1.0
4,582,986 - BWI76_RS21935 0.57 -0.1
4,583,084 + BWI76_RS21935 0.65 -0.6
4,583,227 + BWI76_RS21935 0.77 +0.0
4,583,323 - BWI76_RS21935 0.85 -0.6
4,583,323 - BWI76_RS21935 0.85 +0.8
4,583,652 + +0.3
4,583,857 - BWI76_RS21940 0.37 -0.8
4,583,974 - BWI76_RS21940 0.52 -1.0
4,584,116 - BWI76_RS21940 0.71 +0.1
4,584,350 + -1.0
4,584,376 + +0.9
4,584,386 + -0.1
4,584,389 - -0.3
4,584,394 - -0.1
4,584,394 - +0.3
4,584,614 + BWI76_RS21945 0.14 -0.7
4,584,730 + -0.1
4,584,738 - BWI76_RS21945 0.27 -1.5
4,585,201 - BWI76_RS21945 0.77 -0.2
4,585,327 + +0.9

Or see this region's nucleotide sequence