Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18050

Experiment: KLEB29 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18045 and BWI76_RS18050 are separated by 384 nucleotidesBWI76_RS18050 and BWI76_RS18055 are separated by 16 nucleotidesBWI76_RS18055 and BWI76_RS18060 are separated by 4 nucleotides BWI76_RS18045: BWI76_RS18045 - spore coat U domain-containing protein, at 3,750,377 to 3,751,336 _RS18045 BWI76_RS18050: BWI76_RS18050 - hypothetical protein, at 3,751,721 to 3,752,059 _RS18050 BWI76_RS18055: BWI76_RS18055 - copper resistance protein D, at 3,752,076 to 3,752,945 _RS18055 BWI76_RS18060: BWI76_RS18060 - hypothetical protein, at 3,752,950 to 3,753,324 _RS18060 Position (kb) 3751 3752 3753Strain fitness (log2 ratio) -1 0 1 2at 3750.726 kb on + strand, within BWI76_RS18045at 3750.734 kb on - strand, within BWI76_RS18045at 3750.920 kb on + strand, within BWI76_RS18045at 3750.928 kb on - strand, within BWI76_RS18045at 3751.332 kb on + strandat 3751.492 kb on + strandat 3751.512 kb on + strandat 3751.548 kb on + strandat 3751.796 kb on - strand, within BWI76_RS18050at 3751.922 kb on + strand, within BWI76_RS18050at 3751.977 kb on - strand, within BWI76_RS18050at 3751.977 kb on - strand, within BWI76_RS18050at 3752.115 kb on - strandat 3752.163 kb on + strand, within BWI76_RS18055at 3752.617 kb on + strand, within BWI76_RS18055at 3752.929 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB29 MOI 0.1
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3,750,726 + BWI76_RS18045 0.36 +0.0
3,750,734 - BWI76_RS18045 0.37 +0.3
3,750,920 + BWI76_RS18045 0.57 +0.6
3,750,928 - BWI76_RS18045 0.57 +1.5
3,751,332 + +0.3
3,751,492 + +0.0
3,751,512 + -0.4
3,751,548 + +0.7
3,751,796 - BWI76_RS18050 0.22 -0.4
3,751,922 + BWI76_RS18050 0.59 -1.3
3,751,977 - BWI76_RS18050 0.76 -0.3
3,751,977 - BWI76_RS18050 0.76 +0.2
3,752,115 - +2.0
3,752,163 + BWI76_RS18055 0.10 +0.0
3,752,617 + BWI76_RS18055 0.62 -0.1
3,752,929 - -0.8

Or see this region's nucleotide sequence