Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13205

Experiment: KLEB29 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13195 and BWI76_RS13200 overlap by 26 nucleotidesBWI76_RS13200 and BWI76_RS13205 are separated by 202 nucleotidesBWI76_RS13205 and BWI76_RS13210 are separated by 276 nucleotides BWI76_RS13195: BWI76_RS13195 - glutamate dehydrogenase, at 2,753,748 to 2,755,022 _RS13195 BWI76_RS13200: BWI76_RS13200 - hypothetical protein, at 2,754,997 to 2,755,230 _RS13200 BWI76_RS13205: BWI76_RS13205 - hypothetical protein, at 2,755,433 to 2,756,224 _RS13205 BWI76_RS13210: BWI76_RS13210 - aldehyde dehydrogenase, at 2,756,501 to 2,757,940 _RS13210 Position (kb) 2755 2756 2757Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2755.074 kb on + strand, within BWI76_RS13200at 2755.074 kb on + strand, within BWI76_RS13200at 2755.074 kb on + strand, within BWI76_RS13200at 2755.074 kb on + strand, within BWI76_RS13200at 2755.074 kb on + strand, within BWI76_RS13200at 2755.074 kb on + strand, within BWI76_RS13200at 2755.074 kb on + strand, within BWI76_RS13200at 2755.075 kb on + strand, within BWI76_RS13200at 2755.082 kb on - strand, within BWI76_RS13200at 2755.082 kb on - strand, within BWI76_RS13200at 2755.407 kb on + strandat 2755.662 kb on + strand, within BWI76_RS13205at 2755.757 kb on + strand, within BWI76_RS13205at 2755.899 kb on - strand, within BWI76_RS13205at 2755.915 kb on - strand, within BWI76_RS13205at 2755.951 kb on + strand, within BWI76_RS13205at 2756.542 kb on + strandat 2756.794 kb on + strand, within BWI76_RS13210at 2756.905 kb on - strand, within BWI76_RS13210

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB29 MOI 0.1
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2,755,074 + BWI76_RS13200 0.33 +0.5
2,755,074 + BWI76_RS13200 0.33 -0.1
2,755,074 + BWI76_RS13200 0.33 +0.7
2,755,074 + BWI76_RS13200 0.33 +0.5
2,755,074 + BWI76_RS13200 0.33 -1.6
2,755,074 + BWI76_RS13200 0.33 +0.7
2,755,074 + BWI76_RS13200 0.33 +0.4
2,755,075 + BWI76_RS13200 0.33 -0.7
2,755,082 - BWI76_RS13200 0.36 +1.2
2,755,082 - BWI76_RS13200 0.36 +0.9
2,755,407 + +1.9
2,755,662 + BWI76_RS13205 0.29 -2.9
2,755,757 + BWI76_RS13205 0.41 -0.9
2,755,899 - BWI76_RS13205 0.59 -0.9
2,755,915 - BWI76_RS13205 0.61 +0.0
2,755,951 + BWI76_RS13205 0.65 +0.3
2,756,542 + +0.1
2,756,794 + BWI76_RS13210 0.20 -0.3
2,756,905 - BWI76_RS13210 0.28 +0.3

Or see this region's nucleotide sequence