Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12925

Experiment: KLEB29 MOI 0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS12915 and BWI76_RS12920 are separated by 51 nucleotidesBWI76_RS12920 and BWI76_RS12925 overlap by 4 nucleotidesBWI76_RS12925 and BWI76_RS12930 overlap by 4 nucleotidesBWI76_RS12930 and BWI76_RS12935 overlap by 11 nucleotides BWI76_RS12915: BWI76_RS12915 - 4-hydroxyphenylacetate permease, at 2,690,761 to 2,692,134 _RS12915 BWI76_RS12920: BWI76_RS12920 - DNA-binding protein, at 2,692,186 to 2,692,797 _RS12920 BWI76_RS12925: BWI76_RS12925 - efflux transporter periplasmic adaptor subunit, at 2,692,794 to 2,693,717 _RS12925 BWI76_RS12930: BWI76_RS12930 - DUF1656 domain-containing protein, at 2,693,714 to 2,693,929 _RS12930 BWI76_RS12935: BWI76_RS12935 - fusaric acid resistance protein, at 2,693,919 to 2,695,958 _RS12935 Position (kb) 2692 2693 2694Strain fitness (log2 ratio) -1 0 1at 2691.858 kb on + strand, within BWI76_RS12915at 2691.901 kb on - strand, within BWI76_RS12915at 2692.037 kb on - strandat 2692.460 kb on - strand, within BWI76_RS12920at 2692.821 kb on + strandat 2692.824 kb on - strandat 2692.996 kb on - strand, within BWI76_RS12925at 2693.465 kb on + strand, within BWI76_RS12925at 2693.734 kb on - strandat 2694.051 kb on + strandat 2694.369 kb on - strand, within BWI76_RS12935at 2694.511 kb on - strand, within BWI76_RS12935at 2694.527 kb on + strand, within BWI76_RS12935

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KLEB29 MOI 0.1
remove
2,691,858 + BWI76_RS12915 0.80 -0.2
2,691,901 - BWI76_RS12915 0.83 +0.3
2,692,037 - +0.9
2,692,460 - BWI76_RS12920 0.45 -1.0
2,692,821 + +0.5
2,692,824 - +0.9
2,692,996 - BWI76_RS12925 0.22 -0.4
2,693,465 + BWI76_RS12925 0.73 -1.5
2,693,734 - -0.2
2,694,051 + -0.6
2,694,369 - BWI76_RS12935 0.22 +0.5
2,694,511 - BWI76_RS12935 0.29 -0.3
2,694,527 + BWI76_RS12935 0.30 -0.3

Or see this region's nucleotide sequence