Experiment: KLEB29 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12915 and BWI76_RS12920 are separated by 51 nucleotides BWI76_RS12920 and BWI76_RS12925 overlap by 4 nucleotides BWI76_RS12925 and BWI76_RS12930 overlap by 4 nucleotides BWI76_RS12930 and BWI76_RS12935 overlap by 11 nucleotides
BWI76_RS12915: BWI76_RS12915 - 4-hydroxyphenylacetate permease, at 2,690,761 to 2,692,134
_RS12915
BWI76_RS12920: BWI76_RS12920 - DNA-binding protein, at 2,692,186 to 2,692,797
_RS12920
BWI76_RS12925: BWI76_RS12925 - efflux transporter periplasmic adaptor subunit, at 2,692,794 to 2,693,717
_RS12925
BWI76_RS12930: BWI76_RS12930 - DUF1656 domain-containing protein, at 2,693,714 to 2,693,929
_RS12930
BWI76_RS12935: BWI76_RS12935 - fusaric acid resistance protein, at 2,693,919 to 2,695,958
_RS12935
Position (kb)
2692
2693
2694 Strain fitness (log2 ratio)
-1
0
1 at 2691.858 kb on + strand, within BWI76_RS12915 at 2691.901 kb on - strand, within BWI76_RS12915 at 2692.037 kb on - strand at 2692.460 kb on - strand, within BWI76_RS12920 at 2692.821 kb on + strand at 2692.824 kb on - strand at 2692.996 kb on - strand, within BWI76_RS12925 at 2693.465 kb on + strand, within BWI76_RS12925 at 2693.734 kb on - strand at 2694.051 kb on + strand at 2694.369 kb on - strand, within BWI76_RS12935 at 2694.511 kb on - strand, within BWI76_RS12935 at 2694.527 kb on + strand, within BWI76_RS12935
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB29 MOI 0.1 remove 2,691,858 + BWI76_RS12915 0.80 -0.2 2,691,901 - BWI76_RS12915 0.83 +0.3 2,692,037 - +0.9 2,692,460 - BWI76_RS12920 0.45 -1.0 2,692,821 + +0.5 2,692,824 - +0.9 2,692,996 - BWI76_RS12925 0.22 -0.4 2,693,465 + BWI76_RS12925 0.73 -1.5 2,693,734 - -0.2 2,694,051 + -0.6 2,694,369 - BWI76_RS12935 0.22 +0.5 2,694,511 - BWI76_RS12935 0.29 -0.3 2,694,527 + BWI76_RS12935 0.30 -0.3
Or see this region's nucleotide sequence