Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10675

Experiment: KLEB29 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10670 and BWI76_RS10675 are separated by 308 nucleotidesBWI76_RS10675 and BWI76_RS10680 are separated by 32 nucleotides BWI76_RS10670: BWI76_RS10670 - PTS fructose transporter subunit IIC, at 2,252,753 to 2,253,829 _RS10670 BWI76_RS10675: BWI76_RS10675 - phosphoenolpyruvate--protein phosphotransferase, at 2,254,138 to 2,256,639 _RS10675 BWI76_RS10680: BWI76_RS10680 - tartrate dehydrogenase, at 2,256,672 to 2,257,790 _RS10680 Position (kb) 2254 2255 2256 2257Strain fitness (log2 ratio) -1 0 1at 2253.276 kb on + strand, within BWI76_RS10670at 2253.676 kb on + strand, within BWI76_RS10670at 2253.783 kb on - strandat 2254.178 kb on + strandat 2254.365 kb on - strandat 2254.570 kb on - strand, within BWI76_RS10675at 2254.815 kb on - strand, within BWI76_RS10675at 2255.217 kb on + strand, within BWI76_RS10675at 2255.566 kb on + strand, within BWI76_RS10675at 2255.574 kb on - strand, within BWI76_RS10675at 2255.908 kb on - strand, within BWI76_RS10675at 2256.226 kb on - strand, within BWI76_RS10675at 2256.245 kb on + strand, within BWI76_RS10675at 2256.245 kb on + strand, within BWI76_RS10675at 2256.253 kb on - strand, within BWI76_RS10675at 2256.299 kb on + strand, within BWI76_RS10675at 2256.634 kb on - strandat 2257.058 kb on + strand, within BWI76_RS10680at 2257.097 kb on + strand, within BWI76_RS10680

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB29 MOI 0.1
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2,253,276 + BWI76_RS10670 0.49 -0.5
2,253,676 + BWI76_RS10670 0.86 -1.0
2,253,783 - -0.5
2,254,178 + +0.4
2,254,365 - -1.0
2,254,570 - BWI76_RS10675 0.17 -0.6
2,254,815 - BWI76_RS10675 0.27 -0.7
2,255,217 + BWI76_RS10675 0.43 -0.5
2,255,566 + BWI76_RS10675 0.57 -0.6
2,255,574 - BWI76_RS10675 0.57 -0.4
2,255,908 - BWI76_RS10675 0.71 -0.6
2,256,226 - BWI76_RS10675 0.83 -0.6
2,256,245 + BWI76_RS10675 0.84 -0.8
2,256,245 + BWI76_RS10675 0.84 -1.0
2,256,253 - BWI76_RS10675 0.85 +0.4
2,256,299 + BWI76_RS10675 0.86 -0.7
2,256,634 - +1.0
2,257,058 + BWI76_RS10680 0.34 -0.6
2,257,097 + BWI76_RS10680 0.38 +0.4

Or see this region's nucleotide sequence