Experiment: KLEB29 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27285 and BWI76_RS27290 are separated by 21 nucleotides BWI76_RS27290 and BWI76_RS27295 are separated by 111 nucleotides
BWI76_RS27285: BWI76_RS27285 - glycosyl transferase family protein, at 5,662,984 to 5,664,066
_RS27285
BWI76_RS27290: BWI76_RS27290 - hypothetical protein, at 5,664,088 to 5,665,050
_RS27290
BWI76_RS27295: BWI76_RS27295 - putative lipopolysaccharide heptosyltransferase III, at 5,665,162 to 5,666,238
_RS27295
Position (kb) 5664
5665
5666 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5663.232 kb on + strand, within BWI76_RS27285 at 5663.303 kb on + strand, within BWI76_RS27285 at 5663.374 kb on - strand, within BWI76_RS27285 at 5663.374 kb on - strand, within BWI76_RS27285 at 5663.418 kb on - strand, within BWI76_RS27285 at 5663.444 kb on + strand, within BWI76_RS27285 at 5663.464 kb on - strand, within BWI76_RS27285 at 5663.466 kb on + strand, within BWI76_RS27285 at 5663.472 kb on - strand, within BWI76_RS27285 at 5663.483 kb on + strand, within BWI76_RS27285 at 5663.491 kb on - strand, within BWI76_RS27285 at 5663.520 kb on + strand, within BWI76_RS27285 at 5663.520 kb on + strand, within BWI76_RS27285 at 5663.520 kb on + strand, within BWI76_RS27285 at 5663.528 kb on - strand, within BWI76_RS27285 at 5663.528 kb on - strand, within BWI76_RS27285 at 5663.541 kb on + strand, within BWI76_RS27285 at 5663.541 kb on + strand, within BWI76_RS27285 at 5663.541 kb on + strand, within BWI76_RS27285 at 5663.541 kb on + strand, within BWI76_RS27285 at 5663.541 kb on + strand, within BWI76_RS27285 at 5663.541 kb on + strand, within BWI76_RS27285 at 5663.541 kb on + strand, within BWI76_RS27285 at 5663.541 kb on + strand, within BWI76_RS27285 at 5663.546 kb on + strand, within BWI76_RS27285 at 5663.549 kb on - strand, within BWI76_RS27285 at 5663.549 kb on - strand, within BWI76_RS27285 at 5663.554 kb on - strand, within BWI76_RS27285 at 5663.567 kb on + strand, within BWI76_RS27285 at 5663.567 kb on + strand, within BWI76_RS27285 at 5663.567 kb on + strand, within BWI76_RS27285 at 5663.567 kb on + strand, within BWI76_RS27285 at 5663.567 kb on + strand, within BWI76_RS27285 at 5663.575 kb on - strand, within BWI76_RS27285 at 5663.575 kb on - strand, within BWI76_RS27285 at 5663.575 kb on - strand, within BWI76_RS27285 at 5663.575 kb on - strand, within BWI76_RS27285 at 5663.701 kb on + strand, within BWI76_RS27285 at 5663.701 kb on + strand at 5663.701 kb on + strand, within BWI76_RS27285 at 5663.703 kb on - strand, within BWI76_RS27285 at 5663.709 kb on - strand, within BWI76_RS27285 at 5663.730 kb on + strand, within BWI76_RS27285 at 5663.730 kb on + strand, within BWI76_RS27285 at 5663.738 kb on - strand, within BWI76_RS27285 at 5663.780 kb on + strand, within BWI76_RS27285 at 5663.788 kb on - strand, within BWI76_RS27285 at 5663.788 kb on - strand, within BWI76_RS27285 at 5663.788 kb on - strand, within BWI76_RS27285 at 5663.788 kb on - strand, within BWI76_RS27285 at 5663.788 kb on - strand, within BWI76_RS27285 at 5663.809 kb on + strand, within BWI76_RS27285 at 5663.828 kb on - strand, within BWI76_RS27285 at 5663.844 kb on - strand, within BWI76_RS27285 at 5663.849 kb on - strand, within BWI76_RS27285 at 5663.850 kb on + strand, within BWI76_RS27285 at 5663.858 kb on - strand, within BWI76_RS27285 at 5663.858 kb on - strand, within BWI76_RS27285 at 5663.858 kb on - strand, within BWI76_RS27285 at 5663.867 kb on + strand, within BWI76_RS27285 at 5663.867 kb on + strand, within BWI76_RS27285 at 5663.867 kb on + strand, within BWI76_RS27285 at 5663.867 kb on + strand, within BWI76_RS27285 at 5663.875 kb on - strand, within BWI76_RS27285 at 5663.875 kb on - strand, within BWI76_RS27285 at 5663.875 kb on - strand, within BWI76_RS27285 at 5663.899 kb on - strand, within BWI76_RS27285 at 5663.904 kb on + strand, within BWI76_RS27285 at 5663.910 kb on - strand, within BWI76_RS27285 at 5663.959 kb on + strand at 5663.962 kb on - strand at 5663.962 kb on - strand at 5663.962 kb on - strand at 5664.049 kb on - strand at 5664.059 kb on - strand at 5664.059 kb on - strand at 5664.070 kb on - strand at 5664.070 kb on - strand at 5664.077 kb on + strand at 5664.078 kb on - strand at 5664.078 kb on - strand at 5664.100 kb on + strand at 5664.108 kb on - strand at 5664.118 kb on - strand at 5664.118 kb on - strand at 5664.134 kb on + strand at 5664.134 kb on + strand at 5664.134 kb on + strand at 5664.134 kb on + strand at 5664.134 kb on + strand at 5664.134 kb on + strand at 5664.142 kb on - strand at 5664.142 kb on - strand at 5664.142 kb on - strand at 5664.142 kb on - strand at 5664.142 kb on - strand at 5664.142 kb on - strand at 5664.142 kb on - strand at 5664.142 kb on - strand at 5664.142 kb on - strand at 5664.147 kb on + strand at 5664.221 kb on - strand, within BWI76_RS27290 at 5664.223 kb on + strand, within BWI76_RS27290 at 5664.223 kb on + strand, within BWI76_RS27290 at 5664.237 kb on + strand, within BWI76_RS27290 at 5664.238 kb on - strand, within BWI76_RS27290 at 5664.242 kb on + strand, within BWI76_RS27290 at 5664.245 kb on - strand, within BWI76_RS27290 at 5664.245 kb on - strand, within BWI76_RS27290 at 5664.260 kb on - strand, within BWI76_RS27290 at 5664.269 kb on + strand, within BWI76_RS27290 at 5664.269 kb on + strand, within BWI76_RS27290 at 5664.277 kb on - strand, within BWI76_RS27290 at 5664.380 kb on + strand, within BWI76_RS27290 at 5664.388 kb on - strand, within BWI76_RS27290 at 5664.694 kb on - strand, within BWI76_RS27290 at 5664.744 kb on - strand, within BWI76_RS27290 at 5664.744 kb on - strand at 5664.802 kb on + strand, within BWI76_RS27290 at 5664.802 kb on + strand, within BWI76_RS27290 at 5665.002 kb on + strand at 5665.078 kb on + strand at 5665.589 kb on + strand, within BWI76_RS27295
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB29 MOI 1 remove 5,663,232 + BWI76_RS27285 0.23 -0.0 5,663,303 + BWI76_RS27285 0.29 -0.9 5,663,374 - BWI76_RS27285 0.36 +2.2 5,663,374 - BWI76_RS27285 0.36 -1.2 5,663,418 - BWI76_RS27285 0.40 -1.0 5,663,444 + BWI76_RS27285 0.42 -0.2 5,663,464 - BWI76_RS27285 0.44 -0.1 5,663,466 + BWI76_RS27285 0.45 -0.3 5,663,472 - BWI76_RS27285 0.45 +0.8 5,663,483 + BWI76_RS27285 0.46 -2.5 5,663,491 - BWI76_RS27285 0.47 -0.3 5,663,520 + BWI76_RS27285 0.49 -2.2 5,663,520 + BWI76_RS27285 0.49 -0.8 5,663,520 + BWI76_RS27285 0.49 -0.4 5,663,528 - BWI76_RS27285 0.50 +0.6 5,663,528 - BWI76_RS27285 0.50 -0.1 5,663,541 + BWI76_RS27285 0.51 -0.7 5,663,541 + BWI76_RS27285 0.51 -0.2 5,663,541 + BWI76_RS27285 0.51 -2.0 5,663,541 + BWI76_RS27285 0.51 -0.9 5,663,541 + BWI76_RS27285 0.51 -1.5 5,663,541 + BWI76_RS27285 0.51 +0.1 5,663,541 + BWI76_RS27285 0.51 -0.4 5,663,541 + BWI76_RS27285 0.51 -0.6 5,663,546 + BWI76_RS27285 0.52 +0.4 5,663,549 - BWI76_RS27285 0.52 -0.1 5,663,549 - BWI76_RS27285 0.52 -0.7 5,663,554 - BWI76_RS27285 0.53 -1.4 5,663,567 + BWI76_RS27285 0.54 -0.7 5,663,567 + BWI76_RS27285 0.54 -0.9 5,663,567 + BWI76_RS27285 0.54 -1.2 5,663,567 + BWI76_RS27285 0.54 -1.1 5,663,567 + BWI76_RS27285 0.54 -2.1 5,663,575 - BWI76_RS27285 0.55 -0.2 5,663,575 - BWI76_RS27285 0.55 -0.6 5,663,575 - BWI76_RS27285 0.55 +0.3 5,663,575 - BWI76_RS27285 0.55 -0.2 5,663,701 + BWI76_RS27285 0.66 +0.8 5,663,701 + -0.4 5,663,701 + BWI76_RS27285 0.66 +0.9 5,663,703 - BWI76_RS27285 0.66 +1.3 5,663,709 - BWI76_RS27285 0.67 -2.2 5,663,730 + BWI76_RS27285 0.69 -0.2 5,663,730 + BWI76_RS27285 0.69 -1.7 5,663,738 - BWI76_RS27285 0.70 +1.3 5,663,780 + BWI76_RS27285 0.73 -0.4 5,663,788 - BWI76_RS27285 0.74 +0.6 5,663,788 - BWI76_RS27285 0.74 -1.5 5,663,788 - BWI76_RS27285 0.74 +0.0 5,663,788 - BWI76_RS27285 0.74 -0.3 5,663,788 - BWI76_RS27285 0.74 -0.4 5,663,809 + BWI76_RS27285 0.76 -0.6 5,663,828 - BWI76_RS27285 0.78 -0.4 5,663,844 - BWI76_RS27285 0.79 -0.8 5,663,849 - BWI76_RS27285 0.80 -0.1 5,663,850 + BWI76_RS27285 0.80 +1.9 5,663,858 - BWI76_RS27285 0.81 -1.0 5,663,858 - BWI76_RS27285 0.81 -2.2 5,663,858 - BWI76_RS27285 0.81 -1.5 5,663,867 + BWI76_RS27285 0.82 -0.5 5,663,867 + BWI76_RS27285 0.82 -0.7 5,663,867 + BWI76_RS27285 0.82 +0.0 5,663,867 + BWI76_RS27285 0.82 +0.5 5,663,875 - BWI76_RS27285 0.82 -0.2 5,663,875 - BWI76_RS27285 0.82 +0.4 5,663,875 - BWI76_RS27285 0.82 +2.0 5,663,899 - BWI76_RS27285 0.84 -0.8 5,663,904 + BWI76_RS27285 0.85 -1.1 5,663,910 - BWI76_RS27285 0.86 -1.0 5,663,959 + +0.1 5,663,962 - +0.8 5,663,962 - -0.7 5,663,962 - -0.9 5,664,049 - -0.2 5,664,059 - +0.6 5,664,059 - -1.2 5,664,070 - +0.0 5,664,070 - -0.8 5,664,077 + -0.4 5,664,078 - -0.5 5,664,078 - -0.4 5,664,100 + -2.9 5,664,108 - -0.6 5,664,118 - -1.7 5,664,118 - +0.4 5,664,134 + -3.5 5,664,134 + +0.1 5,664,134 + -2.1 5,664,134 + -1.0 5,664,134 + +0.6 5,664,134 + -2.9 5,664,142 - -3.8 5,664,142 - -1.0 5,664,142 - -1.3 5,664,142 - -2.1 5,664,142 - -2.0 5,664,142 - -1.7 5,664,142 - -0.7 5,664,142 - -0.8 5,664,142 - +1.4 5,664,147 + -0.7 5,664,221 - BWI76_RS27290 0.14 -2.6 5,664,223 + BWI76_RS27290 0.14 +0.1 5,664,223 + BWI76_RS27290 0.14 -3.1 5,664,237 + BWI76_RS27290 0.15 -1.1 5,664,238 - BWI76_RS27290 0.16 -1.6 5,664,242 + BWI76_RS27290 0.16 -2.5 5,664,245 - BWI76_RS27290 0.16 -1.2 5,664,245 - BWI76_RS27290 0.16 -1.1 5,664,260 - BWI76_RS27290 0.18 -1.8 5,664,269 + BWI76_RS27290 0.19 -2.0 5,664,269 + BWI76_RS27290 0.19 -0.6 5,664,277 - BWI76_RS27290 0.20 -1.0 5,664,380 + BWI76_RS27290 0.30 -0.2 5,664,388 - BWI76_RS27290 0.31 +0.3 5,664,694 - BWI76_RS27290 0.63 -0.4 5,664,744 - BWI76_RS27290 0.68 -4.0 5,664,744 - -2.4 5,664,802 + BWI76_RS27290 0.74 -1.5 5,664,802 + BWI76_RS27290 0.74 -1.8 5,665,002 + -1.5 5,665,078 + -3.2 5,665,589 + BWI76_RS27295 0.40 +2.4
Or see this region's nucleotide sequence