Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24810

Experiment: KLEB29 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS24805 and BWI76_RS24810 are separated by 0 nucleotidesBWI76_RS24810 and BWI76_RS24820 are separated by 412 nucleotides BWI76_RS24805: BWI76_RS24805 - hypothetical protein, at 5,170,237 to 5,170,623 _RS24805 BWI76_RS24810: BWI76_RS24810 - hypothetical protein, at 5,170,624 to 5,171,010 _RS24810 BWI76_RS24820: BWI76_RS24820 - glycerate 2-kinase, at 5,171,423 to 5,172,568 _RS24820 Position (kb) 5170 5171 5172Strain fitness (log2 ratio) -2 -1 0 1at 5169.648 kb on + strandat 5170.816 kb on + strand, within BWI76_RS24810at 5170.823 kb on + strand, within BWI76_RS24810at 5171.427 kb on - strandat 5171.463 kb on + strandat 5171.521 kb on + strandat 5171.529 kb on - strandat 5171.529 kb on - strandat 5171.556 kb on + strand, within BWI76_RS24820

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KLEB29 MOI 1
remove
5,169,648 + +0.0
5,170,816 + BWI76_RS24810 0.50 -1.6
5,170,823 + BWI76_RS24810 0.51 -2.6
5,171,427 - -0.5
5,171,463 + +0.9
5,171,521 + +1.0
5,171,529 - -1.1
5,171,529 - -0.5
5,171,556 + BWI76_RS24820 0.12 -0.5

Or see this region's nucleotide sequence