Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18865

Experiment: KLEB29 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18860 and BWI76_RS18865 overlap by 1 nucleotidesBWI76_RS18865 and BWI76_RS18870 overlap by 4 nucleotidesBWI76_RS18870 and BWI76_RS18875 overlap by 4 nucleotides BWI76_RS18860: BWI76_RS18860 - homocitrate synthase, at 3,912,103 to 3,913,245 _RS18860 BWI76_RS18865: BWI76_RS18865 - nitrogenase-stabilizing/protective protein NifW, at 3,913,245 to 3,913,505 _RS18865 BWI76_RS18870: BWI76_RS18870 - protein NifZ, at 3,913,502 to 3,913,948 _RS18870 BWI76_RS18875: BWI76_RS18875 - nitrogen fixation protein NifM, at 3,913,945 to 3,914,745 _RS18875 Position (kb) 3913 3914Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3912.636 kb on + strand, within BWI76_RS18860at 3912.750 kb on + strand, within BWI76_RS18860at 3912.954 kb on - strand, within BWI76_RS18860at 3913.047 kb on + strand, within BWI76_RS18860at 3913.104 kb on + strand, within BWI76_RS18860at 3913.119 kb on + strand, within BWI76_RS18860at 3913.380 kb on - strand, within BWI76_RS18865at 3913.774 kb on - strand, within BWI76_RS18870at 3913.910 kb on + strandat 3914.056 kb on + strand, within BWI76_RS18875at 3914.312 kb on - strand, within BWI76_RS18875at 3914.368 kb on + strand, within BWI76_RS18875at 3914.464 kb on - strand, within BWI76_RS18875at 3914.498 kb on - strand, within BWI76_RS18875

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB29 MOI 1
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3,912,636 + BWI76_RS18860 0.47 -1.8
3,912,750 + BWI76_RS18860 0.57 +2.0
3,912,954 - BWI76_RS18860 0.74 +0.8
3,913,047 + BWI76_RS18860 0.83 +0.6
3,913,104 + BWI76_RS18860 0.88 +0.8
3,913,119 + BWI76_RS18860 0.89 +0.1
3,913,380 - BWI76_RS18865 0.52 -0.8
3,913,774 - BWI76_RS18870 0.61 +1.1
3,913,910 + -3.0
3,914,056 + BWI76_RS18875 0.14 +0.3
3,914,312 - BWI76_RS18875 0.46 +0.1
3,914,368 + BWI76_RS18875 0.53 +2.6
3,914,464 - BWI76_RS18875 0.65 +0.3
3,914,498 - BWI76_RS18875 0.69 -0.0

Or see this region's nucleotide sequence