Experiment: KLEB29 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15915 and BWI76_RS15920 are separated by 102 nucleotides BWI76_RS15920 and BWI76_RS15925 are separated by 148 nucleotides BWI76_RS15925 and BWI76_RS15930 are separated by 10 nucleotides BWI76_RS15930 and BWI76_RS15935 are separated by 1 nucleotides
BWI76_RS15915: BWI76_RS15915 - YnfC family lipoprotein, at 3,301,046 to 3,301,756
_RS15915
BWI76_RS15920: BWI76_RS15920 - hypothetical protein, at 3,301,859 to 3,302,110
_RS15920
BWI76_RS15925: BWI76_RS15925 - dimethyl sulfoxide reductase subunit A, at 3,302,259 to 3,304,694
_RS15925
BWI76_RS15930: BWI76_RS15930 - dimethylsulfoxide reductase, chain B, at 3,304,705 to 3,305,322
_RS15930
BWI76_RS15935: BWI76_RS15935 - dimethyl sulfoxide reductase, at 3,305,324 to 3,306,181
_RS15935
Position (kb)
3302
3303
3304
3305 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3301.677 kb on + strand, within BWI76_RS15915 at 3301.689 kb on + strand at 3301.702 kb on + strand at 3301.779 kb on - strand at 3301.871 kb on + strand at 3301.887 kb on - strand, within BWI76_RS15920 at 3302.134 kb on - strand at 3302.473 kb on - strand at 3302.857 kb on - strand, within BWI76_RS15925 at 3302.887 kb on - strand, within BWI76_RS15925 at 3303.716 kb on + strand, within BWI76_RS15925 at 3303.748 kb on - strand, within BWI76_RS15925 at 3304.008 kb on - strand, within BWI76_RS15925 at 3304.663 kb on + strand at 3304.928 kb on + strand, within BWI76_RS15930 at 3304.928 kb on + strand, within BWI76_RS15930 at 3304.936 kb on - strand, within BWI76_RS15930 at 3304.936 kb on - strand, within BWI76_RS15930 at 3305.042 kb on + strand, within BWI76_RS15930
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB29 MOI 1 remove 3,301,677 + BWI76_RS15915 0.89 -0.6 3,301,689 + +1.2 3,301,702 + -0.5 3,301,779 - -0.8 3,301,871 + +0.2 3,301,887 - BWI76_RS15920 0.11 -1.0 3,302,134 - -2.7 3,302,473 - -2.4 3,302,857 - BWI76_RS15925 0.25 -0.8 3,302,887 - BWI76_RS15925 0.26 -0.9 3,303,716 + BWI76_RS15925 0.60 -3.3 3,303,748 - BWI76_RS15925 0.61 +0.2 3,304,008 - BWI76_RS15925 0.72 -0.2 3,304,663 + +0.9 3,304,928 + BWI76_RS15930 0.36 +0.3 3,304,928 + BWI76_RS15930 0.36 +1.9 3,304,936 - BWI76_RS15930 0.37 +1.2 3,304,936 - BWI76_RS15930 0.37 +2.0 3,305,042 + BWI76_RS15930 0.55 +1.2
Or see this region's nucleotide sequence