Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14015

Experiment: KLEB29 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14010 and BWI76_RS14015 are separated by 265 nucleotidesBWI76_RS14015 and BWI76_RS14020 are separated by 18 nucleotides BWI76_RS14010: BWI76_RS14010 - SDR family oxidoreductase, at 2,927,308 to 2,928,090 _RS14010 BWI76_RS14015: BWI76_RS14015 - L-2,4-diaminobutyrate decarboxylase, at 2,928,356 to 2,929,828 _RS14015 BWI76_RS14020: BWI76_RS14020 - aspartate aminotransferase family protein, at 2,929,847 to 2,931,232 _RS14020 Position (kb) 2928 2929 2930Strain fitness (log2 ratio) -2 -1 0 1at 2927.693 kb on + strand, within BWI76_RS14010at 2927.773 kb on + strand, within BWI76_RS14010at 2927.810 kb on + strand, within BWI76_RS14010at 2927.957 kb on + strand, within BWI76_RS14010at 2928.097 kb on + strandat 2928.114 kb on + strandat 2929.084 kb on + strand, within BWI76_RS14015at 2929.119 kb on + strand, within BWI76_RS14015at 2929.127 kb on - strand, within BWI76_RS14015at 2929.734 kb on - strandat 2930.517 kb on + strand, within BWI76_RS14020at 2930.675 kb on - strand, within BWI76_RS14020

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB29 MOI 1
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2,927,693 + BWI76_RS14010 0.49 +0.6
2,927,773 + BWI76_RS14010 0.59 +0.9
2,927,810 + BWI76_RS14010 0.64 +0.5
2,927,957 + BWI76_RS14010 0.83 -2.3
2,928,097 + -1.5
2,928,114 + +1.1
2,929,084 + BWI76_RS14015 0.49 +1.3
2,929,119 + BWI76_RS14015 0.52 -1.4
2,929,127 - BWI76_RS14015 0.52 -0.7
2,929,734 - -0.4
2,930,517 + BWI76_RS14020 0.48 +1.3
2,930,675 - BWI76_RS14020 0.60 -1.8

Or see this region's nucleotide sequence