Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13495

Experiment: KLEB29 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS13490 and BWI76_RS13495 are separated by 291 nucleotidesBWI76_RS13495 and BWI76_RS13500 are separated by 72 nucleotides BWI76_RS13490: BWI76_RS13490 - pyrimidine-specific ribonucleoside hydrolase RihA, at 2,812,005 to 2,812,940 _RS13490 BWI76_RS13495: BWI76_RS13495 - hypothetical protein, at 2,813,232 to 2,813,531 _RS13495 BWI76_RS13500: BWI76_RS13500 - TonB-dependent receptor, at 2,813,604 to 2,815,715 _RS13500 Position (kb) 2813 2814Strain fitness (log2 ratio) -2 -1 0 1 2at 2812.303 kb on + strand, within BWI76_RS13490at 2812.370 kb on + strand, within BWI76_RS13490at 2812.646 kb on - strandat 2812.768 kb on + strand, within BWI76_RS13490at 2812.864 kb on + strandat 2813.007 kb on + strandat 2813.007 kb on + strandat 2813.007 kb on + strandat 2813.020 kb on - strandat 2813.025 kb on - strandat 2813.247 kb on + strandat 2813.259 kb on + strandat 2813.259 kb on + strandat 2813.267 kb on - strand, within BWI76_RS13495at 2813.267 kb on - strand, within BWI76_RS13495at 2813.455 kb on + strand, within BWI76_RS13495at 2813.548 kb on + strandat 2813.800 kb on + strandat 2814.008 kb on - strand, within BWI76_RS13500at 2814.230 kb on + strand, within BWI76_RS13500at 2814.321 kb on + strand, within BWI76_RS13500at 2814.445 kb on + strand, within BWI76_RS13500

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KLEB29 MOI 1
remove
2,812,303 + BWI76_RS13490 0.32 +1.0
2,812,370 + BWI76_RS13490 0.39 -0.2
2,812,646 - +0.2
2,812,768 + BWI76_RS13490 0.82 -1.8
2,812,864 + -0.1
2,813,007 + -0.2
2,813,007 + -1.5
2,813,007 + -1.0
2,813,020 - +1.8
2,813,025 - -0.4
2,813,247 + +0.9
2,813,259 + +0.5
2,813,259 + -1.2
2,813,267 - BWI76_RS13495 0.12 -2.7
2,813,267 - BWI76_RS13495 0.12 +0.2
2,813,455 + BWI76_RS13495 0.74 -1.2
2,813,548 + -0.3
2,813,800 + -1.4
2,814,008 - BWI76_RS13500 0.19 -0.2
2,814,230 + BWI76_RS13500 0.30 -1.3
2,814,321 + BWI76_RS13500 0.34 -0.2
2,814,445 + BWI76_RS13500 0.40 +1.2

Or see this region's nucleotide sequence