Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13115

Experiment: KLEB29 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS13110 and BWI76_RS13115 overlap by 4 nucleotidesBWI76_RS13115 and BWI76_RS13120 are separated by 2 nucleotidesBWI76_RS13120 and BWI76_RS13125 are separated by 3 nucleotides BWI76_RS13110: BWI76_RS13110 - phenylacetic acid degradation protein, at 2,734,299 to 2,735,369 _RS13110 BWI76_RS13115: BWI76_RS13115 - 2,3-dehydroadipyl-CoA hydratase, at 2,735,366 to 2,736,133 _RS13115 BWI76_RS13120: BWI76_RS13120 - 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase, at 2,736,136 to 2,736,924 _RS13120 BWI76_RS13125: BWI76_RS13125 - 3-hydroxyacyl-CoA dehydrogenase, at 2,736,928 to 2,738,349 _RS13125 Position (kb) 2735 2736 2737Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2734.454 kb on + strand, within BWI76_RS13110at 2734.932 kb on - strand, within BWI76_RS13110at 2735.127 kb on - strand, within BWI76_RS13110at 2735.337 kb on + strandat 2735.375 kb on - strandat 2736.150 kb on - strandat 2736.166 kb on - strandat 2736.758 kb on + strand, within BWI76_RS13120at 2736.963 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KLEB29 MOI 1
remove
2,734,454 + BWI76_RS13110 0.14 +4.0
2,734,932 - BWI76_RS13110 0.59 -0.2
2,735,127 - BWI76_RS13110 0.77 -1.5
2,735,337 + +1.3
2,735,375 - -0.5
2,736,150 - +0.3
2,736,166 - -3.1
2,736,758 + BWI76_RS13120 0.79 -2.7
2,736,963 - +1.4

Or see this region's nucleotide sequence