Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13085

Experiment: KLEB29 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13080 and BWI76_RS13085 are separated by 190 nucleotidesBWI76_RS13085 and BWI76_RS13090 are separated by 286 nucleotides BWI76_RS13080: BWI76_RS13080 - tyramine oxidase, at 2,727,009 to 2,729,267 _RS13080 BWI76_RS13085: BWI76_RS13085 - bifunctional oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase, at 2,729,458 to 2,731,503 _RS13085 BWI76_RS13090: BWI76_RS13090 - phenylacetate-CoA oxygenase subunit PaaA, at 2,731,790 to 2,732,719 _RS13090 Position (kb) 2729 2730 2731 2732Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2728.484 kb on + strand, within BWI76_RS13080at 2728.625 kb on + strand, within BWI76_RS13080at 2728.857 kb on - strand, within BWI76_RS13080at 2729.207 kb on - strandat 2729.232 kb on + strandat 2729.240 kb on - strandat 2729.331 kb on + strandat 2729.426 kb on - strandat 2729.426 kb on - strandat 2729.426 kb on - strandat 2729.818 kb on - strand, within BWI76_RS13085at 2729.949 kb on + strand, within BWI76_RS13085at 2729.957 kb on - strand, within BWI76_RS13085at 2730.001 kb on + strand, within BWI76_RS13085at 2730.009 kb on - strand, within BWI76_RS13085at 2730.463 kb on - strand, within BWI76_RS13085at 2730.561 kb on + strand, within BWI76_RS13085at 2730.775 kb on - strand, within BWI76_RS13085at 2731.077 kb on - strand, within BWI76_RS13085at 2731.806 kb on + strandat 2731.992 kb on - strand, within BWI76_RS13090at 2732.023 kb on - strand, within BWI76_RS13090at 2732.123 kb on + strand, within BWI76_RS13090at 2732.224 kb on - strand, within BWI76_RS13090

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB29 MOI 1
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2,728,484 + BWI76_RS13080 0.65 -0.8
2,728,625 + BWI76_RS13080 0.72 +0.3
2,728,857 - BWI76_RS13080 0.82 +1.5
2,729,207 - -1.3
2,729,232 + -1.8
2,729,240 - -1.8
2,729,331 + -0.5
2,729,426 - -1.0
2,729,426 - +1.2
2,729,426 - +0.1
2,729,818 - BWI76_RS13085 0.18 -2.4
2,729,949 + BWI76_RS13085 0.24 -0.8
2,729,957 - BWI76_RS13085 0.24 -1.2
2,730,001 + BWI76_RS13085 0.27 -1.1
2,730,009 - BWI76_RS13085 0.27 -1.2
2,730,463 - BWI76_RS13085 0.49 -0.5
2,730,561 + BWI76_RS13085 0.54 +0.1
2,730,775 - BWI76_RS13085 0.64 -1.7
2,731,077 - BWI76_RS13085 0.79 +2.8
2,731,806 + -2.0
2,731,992 - BWI76_RS13090 0.22 +1.0
2,732,023 - BWI76_RS13090 0.25 -1.2
2,732,123 + BWI76_RS13090 0.36 -1.8
2,732,224 - BWI76_RS13090 0.47 +0.8

Or see this region's nucleotide sequence