Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12605

Experiment: KLEB29 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12600 and BWI76_RS12605 are separated by 198 nucleotidesBWI76_RS12605 and BWI76_RS12610 are separated by 162 nucleotides BWI76_RS12600: BWI76_RS12600 - MFS transporter, at 2,629,380 to 2,630,501 _RS12600 BWI76_RS12605: BWI76_RS12605 - hypothetical protein, at 2,630,700 to 2,631,836 _RS12605 BWI76_RS12610: BWI76_RS12610 - LysR family transcriptional regulator, at 2,631,999 to 2,632,883 _RS12610 Position (kb) 2630 2631 2632Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2629.819 kb on - strand, within BWI76_RS12600at 2629.864 kb on - strand, within BWI76_RS12600at 2629.927 kb on + strand, within BWI76_RS12600at 2630.077 kb on - strand, within BWI76_RS12600at 2630.215 kb on + strand, within BWI76_RS12600at 2630.361 kb on + strand, within BWI76_RS12600at 2630.394 kb on + strandat 2630.402 kb on - strandat 2630.553 kb on + strandat 2630.689 kb on + strandat 2630.763 kb on + strandat 2630.883 kb on - strand, within BWI76_RS12605at 2631.151 kb on + strand, within BWI76_RS12605at 2631.177 kb on + strand, within BWI76_RS12605at 2631.637 kb on - strand, within BWI76_RS12605at 2631.753 kb on + strandat 2631.778 kb on + strandat 2632.089 kb on - strand, within BWI76_RS12610at 2632.100 kb on - strand, within BWI76_RS12610at 2632.723 kb on - strand, within BWI76_RS12610

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB29 MOI 1
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2,629,819 - BWI76_RS12600 0.39 +2.0
2,629,864 - BWI76_RS12600 0.43 +0.7
2,629,927 + BWI76_RS12600 0.49 +0.5
2,630,077 - BWI76_RS12600 0.62 -3.0
2,630,215 + BWI76_RS12600 0.74 +1.4
2,630,361 + BWI76_RS12600 0.87 +0.1
2,630,394 + -3.5
2,630,402 - -0.8
2,630,553 + +0.7
2,630,689 + -1.5
2,630,763 + -0.7
2,630,883 - BWI76_RS12605 0.16 -0.6
2,631,151 + BWI76_RS12605 0.40 -1.7
2,631,177 + BWI76_RS12605 0.42 -2.1
2,631,637 - BWI76_RS12605 0.82 -0.8
2,631,753 + -1.2
2,631,778 + -1.2
2,632,089 - BWI76_RS12610 0.10 +0.0
2,632,100 - BWI76_RS12610 0.11 -0.8
2,632,723 - BWI76_RS12610 0.82 +1.8

Or see this region's nucleotide sequence